Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0597
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.89 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.89 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 563 PSEDAHRLPDAG*WKVF*RGMYRTSSIPTLMVVPPLARQRTPSGSTTPVRS 411
           P++ A RLP    +K+   G      + T ++ P +     P+G TT V+S
Sbjct: 184 PTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKS 234


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 563 PSEDAHRLPDAG*WKVF*RGMYRTSSIPTLMVVPPLARQRTPSGSTTPVRS 411
           P++ A RLP    +K+   G      + T ++ P +     P+G TT V+S
Sbjct: 241 PTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKS 291


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 406 CPDRTGVVLPDGVLCLARGGTTI 474
           CPD   + L DG++C+ +  TTI
Sbjct: 64  CPDGLKL-LSDGLMCVEKVSTTI 85


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 139 LALCENRAAGIGIATSADYDIFVLKL 62
           +A+ E      G+A  A YD  VLKL
Sbjct: 311 IAIKEKLVKDSGVAKDAAYDNIVLKL 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,119
Number of Sequences: 438
Number of extensions: 2989
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)