Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0595
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 158 7e-40
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 6e-15
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 8e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 8e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 1e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 6e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 6e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 3.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.9
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 6.5
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 6.5
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 8.6
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 25 8.6
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 8.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 158 bits (383), Expect = 7e-40
Identities = 72/83 (86%), Positives = 78/83 (93%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L + V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -3
Query: 605 PWFLGMEACGIHETTYNSIMKCDVDIRKDLY 513
P LG+E GIHE TYNSIMKCDVDIRKDLY
Sbjct: 264 PSALGLENAGIHEATYNSIMKCDVDIRKDLY 294
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.4 bits (177), Expect = 6e-15
Identities = 36/88 (40%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 349
L+ + ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 348 STFQQMWISKQEYDESGP---SIVHRKC 274
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 578 GIHETTYNSIMKCDVDIRKDL 516
GI + N I +CDVDIR L
Sbjct: 326 GIPQLFQNCISECDVDIRASL 346
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 73.7 bits (173), Expect = 2e-14
Identities = 34/83 (40%), Positives = 57/83 (68%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L + VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 33.5 bits (73), Expect = 0.025
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 605 PWFLGMEACGIHETTYNSIMKCDVDIRKDLYA 510
P +G EA G+H + SI+ D+D+R LY+
Sbjct: 269 PEMMGSEASGLHIQLFKSILLSDIDLRSTLYS 300
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.7 bits (168), Expect = 8e-14
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 346
L+ + V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 345 TFQQMWISKQEYDESG 298
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 28.7 bits (61), Expect = 0.70
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 578 GIHETTYNSIMKCDVDIRKDL 516
G+HE Y SI+ CD ++R L
Sbjct: 323 GLHELVYQSILACDSELRSPL 343
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.4 bits (135), Expect = 8e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 373
L R VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 372 GGSILAS-LSTFQQMWISKQEYDESG 298
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 605 PWFLGMEACGIHETTYNSIMKCDVDIRKDLY 513
P +G E G+ E +++I DVDIRK LY
Sbjct: 264 PHLVGSEQPGLSEFIFDTIQAADVDIRKYLY 294
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.6 bits (108), Expect = 1e-06
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Frame = -2
Query: 522 GLVRHTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 385
GL ++ VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 384 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 280
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L+ + V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 339 QQMWISKQEYDESGPSIVHRK 277
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -2
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
LV + +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 339 QQMWISKQEYDESGPSIV 286
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -2
Query: 504 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 334
++ GG +PG A +++ I + + I +I PP + ++ W G I + +
Sbjct: 534 LIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSE 593
Query: 333 MWISKQEYDESGPSIVHRK 277
+WI ++ G ++ K
Sbjct: 594 LWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 378 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 277
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 532 TSVRTCTP-HRIVRWYHHVPWNRRPYAKGN 446
TS ++ TP H ++R Y WN++ KG+
Sbjct: 548 TSCKSQTPEHAVIRLYETQSWNQQQVLKGH 577
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 386 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 291
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 453 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 343
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -2
Query: 528 P*GLVRHTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 376
P G ++V +GG+ +PGI + I + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 496 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 317
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 316 GV 311
V
Sbjct: 534 AV 535
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -1
Query: 373 RWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVL----LNAPRVLPP 245
+W+D YLP V L TG W + C L L R+LPP
Sbjct: 629 KWMD-----YLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLPP 670
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 575 IHETTYNSIMKCDVDIRKDLYATP 504
++ + + I KCD D+ ++LY+ P
Sbjct: 7 LNSVSSSEIEKCDEDVEEELYSYP 30
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 463 VGDSRVHGGTTGQYGVAYKSLRMSTSHFMMEL 558
VG RVH G TGQ +A LR+ + EL
Sbjct: 66 VGTGRVHLGITGQDQIAEARLRIGDKLKIEEL 97
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 551 IMKCDVDIRKDLYATPYCPVV 489
+ C V++R ++YA CP+V
Sbjct: 478 LFACPVELRPEVYARMLCPLV 498
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 319 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 405
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,979
Number of Sequences: 5004
Number of extensions: 50473
Number of successful extensions: 158
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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