Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0594
(637 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4T244 Cluster: Chromosome undetermined SCAF10345, whol... 73 8e-12
UniRef50_Q4T243 Cluster: Chromosome undetermined SCAF10345, whol... 73 8e-12
UniRef50_Q49AN0 Cluster: Cryptochrome-2; n=106; Eumetazoa|Rep: C... 71 3e-11
UniRef50_Q4PCL9 Cluster: Putative uncharacterized protein; n=1; ... 57 3e-07
UniRef50_Q52Z99 Cluster: 6-4 photolyase; n=4; Viridiplantae|Rep:... 56 5e-07
UniRef50_A7S6B3 Cluster: Predicted protein; n=3; Nematostella ve... 54 2e-06
UniRef50_A7S6B1 Cluster: Predicted protein; n=1; Nematostella ve... 52 9e-06
UniRef50_UPI0000F1E94A Cluster: PREDICTED: hypothetical protein;... 51 2e-05
UniRef50_Q019Z4 Cluster: Cryptochrome-like protein 1; n=4; Ostre... 51 2e-05
UniRef50_A7P7Q6 Cluster: Chromosome chr9 scaffold_7, whole genom... 47 3e-04
UniRef50_A7D5J0 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;... 45 0.001
UniRef50_O48652 Cluster: 6-4 photolyase; n=3; Arabidopsis thalia... 45 0.002
UniRef50_A4QZX5 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A5UYV1 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;... 44 0.004
UniRef50_Q7ZYX5 Cluster: Cry4 protein; n=13; Euteleostomi|Rep: C... 43 0.005
UniRef50_Q0IDI4 Cluster: Deoxyribodipyrimidine photolyase; n=10;... 43 0.005
UniRef50_O77059 Cluster: CG3772-PA; n=15; Coelomata|Rep: CG3772-... 43 0.007
UniRef50_A3J6I6 Cluster: Deoxyribodipyrimidine photolyase; n=4; ... 42 0.009
UniRef50_Q11W86 Cluster: Deoxyribodipyrimidine photolyase; n=2; ... 42 0.012
UniRef50_Q116U8 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 42 0.012
UniRef50_Q1RKC7 Cluster: Deoxyribodipyrimidine photo-lyase; n=2;... 41 0.022
UniRef50_A1ZPZ8 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 41 0.022
UniRef50_UPI0000E87D35 Cluster: deoxyribodipyrimidine photo-lyas... 41 0.029
UniRef50_Q2BAD6 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 41 0.029
UniRef50_A2R6W6 Cluster: Cofactor: FAD; n=1; Aspergillus niger|R... 41 0.029
UniRef50_A1CJL8 Cluster: DNA photolyase, putative; n=4; Pezizomy... 40 0.050
UniRef50_A1SER8 Cluster: Deoxyribodipyrimidine photo-lyase; n=12... 40 0.066
UniRef50_A0M4X6 Cluster: Cryptochrome-like DNA photolyase family... 40 0.066
UniRef50_Q652J5 Cluster: Deoxyribodipyrimidine photolyase family... 40 0.066
UniRef50_Q8LB72 Cluster: Blue-light photoreceptor PHR2; n=2; Ara... 39 0.12
UniRef50_Q15ZK4 Cluster: Deoxyribodipyrimidine photolyase; n=2; ... 38 0.15
UniRef50_A4A625 Cluster: Deoxyribodipyrimidine photolyase; n=2; ... 38 0.27
UniRef50_A0Y3K3 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 37 0.35
UniRef50_Q23DL8 Cluster: FAD binding domain of DNA photolyase fa... 37 0.35
UniRef50_Q83CE4 Cluster: Deoxyribodipyrimidine photolyase-class ... 37 0.47
UniRef50_A0YV59 Cluster: Deoxyribodipyrimidine photolyase; n=4; ... 37 0.47
UniRef50_P27526 Cluster: Deoxyribodipyrimidine photo-lyase; n=16... 37 0.47
UniRef50_Q1W7G4 Cluster: DNA photolyase protein; n=22; Magnoliop... 36 0.62
UniRef50_Q5V438 Cluster: Photolyase/cryptochrome; n=3; Halobacte... 36 0.62
UniRef50_A3D723 Cluster: Deoxyribodipyrimidine photo-lyase; n=8;... 36 0.82
UniRef50_A0LR66 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;... 36 0.82
UniRef50_A7P504 Cluster: Chromosome chr4 scaffold_6, whole genom... 36 0.82
UniRef50_Q98RW5 Cluster: Putative uncharacterized protein orf272... 36 1.1
UniRef50_Q4KML2 Cluster: Cryptochrome DASH; n=11; cellular organ... 36 1.1
UniRef50_Q84KJ5 Cluster: Cryptochrome DASH, chloroplast/mitochon... 36 1.1
UniRef50_Q46H89 Cluster: Deoxyribodipyrimidine photolyase; n=7; ... 35 1.4
UniRef50_A3JAL3 Cluster: Deoxyribodipyrimidine photolyase; n=4; ... 35 1.4
UniRef50_Q6ML17 Cluster: Deoxyribodipyrimidine photolyase-class ... 35 1.9
UniRef50_Q0BXN5 Cluster: Deoxyribodipyrimidine photolyase family... 35 1.9
UniRef50_Q2JW81 Cluster: Deoxyribodipyrimidine photolyase; n=2; ... 34 2.5
UniRef50_A5GQG9 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 34 2.5
UniRef50_A4BJR5 Cluster: Putative deoxyribodipyrimidine photolya... 34 2.5
UniRef50_Q95UQ7 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;... 34 2.5
UniRef50_Q6CSJ7 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 34 2.5
UniRef50_Q2S3C6 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 34 3.3
UniRef50_Q2FRR1 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 34 3.3
UniRef50_Q6NKC0 Cluster: Putative riboflavin biosynthesis protei... 33 4.4
UniRef50_Q47SJ5 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 33 4.4
UniRef50_A4IYV0 Cluster: Deoxyribodipyrimidine photolyase; n=14;... 33 4.4
UniRef50_Q1G0Y2 Cluster: Cryptochrome dash; n=1; Karenia brevis|... 33 4.4
UniRef50_Q1VSH4 Cluster: Deoxyribodipyrimidine photolyase-class ... 33 5.8
UniRef50_Q6L055 Cluster: Deoxyribodipyrimidine photolyase; n=1; ... 33 5.8
UniRef50_A4FX87 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 33 5.8
UniRef50_P25078 Cluster: Deoxyribodipyrimidine photo-lyase; n=43... 33 5.8
UniRef50_A4M6R0 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;... 33 7.6
UniRef50_A4GI46 Cluster: Deoxyribodipyrimidine photolyase; n=2; ... 33 7.6
>UniRef50_Q4T244 Cluster: Chromosome undetermined SCAF10345, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10345,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 662
Score = 72.5 bits (170), Expect = 8e-12
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSL 420
NS HWFR LR+HDN AL+ A++ A++ LR +Y LDP VGINR RFLL++L
Sbjct: 4 NSVHWFRKGLRLHDNPALQEALSGADS----LRCVYVLDPWFAGAANVGINRWRFLLEAL 59
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLFVTG 516
E + L+V+RG+ D+ P+L G
Sbjct: 60 EDLDCSLKKLNSRLFVVRGQPTDVFPRLLKVG 91
>UniRef50_Q4T243 Cluster: Chromosome undetermined SCAF10345, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF10345, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 642
Score = 72.5 bits (170), Expect = 8e-12
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSL 420
NS HWFR LR+HDN AL+ A++ A++ LR +Y LDP VGINR RFLL++L
Sbjct: 4 NSVHWFRKGLRLHDNPALQEALSGADS----LRCVYVLDPWFAGAANVGINRWRFLLEAL 59
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLFVTG 516
E + L+V+RG+ D+ P+L G
Sbjct: 60 EDLDCSLKKLNSRLFVVRGQPTDVFPRLLKVG 91
>UniRef50_Q49AN0 Cluster: Cryptochrome-2; n=106; Eumetazoa|Rep:
Cryptochrome-2 - Homo sapiens (Human)
Length = 593
Score = 70.5 bits (165), Expect = 3e-11
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSL 420
+S HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSL
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSL 78
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 79 EDLDTSLRKLNSRLFVVRGQPADVFPRLF 107
>UniRef50_Q4PCL9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 684
Score = 57.2 bits (132), Expect = 3e-07
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLRFLLQSL--E 423
+WFR DLR+HD+ AL+ A+ + + L P++ DPN K +VG+NR RFLL+S+
Sbjct: 9 YWFRTDLRLHDSPALQAAL---DLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLESMIAL 65
Query: 424 XXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
+ L V+RG+ +LLP+L+
Sbjct: 66 SKNITSTQSNSQLLVVRGEPTELLPELW 93
>UniRef50_Q52Z99 Cluster: 6-4 photolyase; n=4; Viridiplantae|Rep:
6-4 photolyase - Dunaliella salina
Length = 600
Score = 56.4 bits (130), Expect = 5e-07
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Frame = +1
Query: 238 QNPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI----KDKVGINRLRF 405
Q S WFR LR+HDN ALR+A + + PI+ +DP +KVG+NR +F
Sbjct: 47 QQGRSILWFRKGLRLHDNPALRDACTGSA----AVFPIFIIDPYFLQKSNNKVGVNRYQF 102
Query: 406 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
LL+SL + L VLRG +++P++
Sbjct: 103 LLESLSDLNSSLTSLGSQLLVLRGTPEEVIPRV 135
>UniRef50_A7S6B3 Cluster: Predicted protein; n=3; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 513
Score = 54.4 bits (125), Expect = 2e-06
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSL 420
+S HWFR DLR+HDN AL + + +YFLDP + + NR FLL+SL
Sbjct: 17 SSMHWFRKDLRLHDNPALLESFKNCQ----AFYGVYFLDPASVQRSNLSPNRWWFLLESL 72
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
+ L V+RG+ V +PKL
Sbjct: 73 RDLDYNLRSLGSRLLVVRGQPVQEMPKL 100
>UniRef50_A7S6B1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 159
Score = 52.4 bits (120), Expect = 9e-06
Identities = 30/85 (35%), Positives = 44/85 (51%)
Frame = +1
Query: 250 SYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXX 429
S HWFR DLR+HDN AL++A++ A+ ++ L NR +FLLQ L+
Sbjct: 8 SCHWFRKDLRLHDNPALKDALDNAD----CFYGVFVLSNFHPSITSGNRWKFLLQCLQDL 63
Query: 430 XXXXXXXXTCLYVLRGKAVDLLPKL 504
+ L +L G V++ PKL
Sbjct: 64 NNSLEELGSKLIILTGSPVEIFPKL 88
>UniRef50_UPI0000F1E94A Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 487
Score = 51.2 bits (117), Expect = 2e-05
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 244 PNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLR 402
PNS HWFR LR+HDN AL+ A+ A+ +R +YFLDP +G+NR R
Sbjct: 427 PNSIHWFRKGLRLHDNPALQEAVRGADT----VRCVYFLDPWFAGSSNLGVNRWR 477
>UniRef50_Q019Z4 Cluster: Cryptochrome-like protein 1; n=4;
Ostreococcus|Rep: Cryptochrome-like protein 1 -
Ostreococcus tauri
Length = 1646
Score = 51.2 bits (117), Expect = 2e-05
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEXXX 432
WFR LR+HDN AL A +P++ LDP +VG NR+RFLLQSL
Sbjct: 1104 WFRKALRVHDNPALSRGTLHAT----ACQPVFVLDPWFCQPSRVGANRMRFLLQSLRDLD 1159
Query: 433 XXXXXXXTCLYVLRGKAVDLLPK 501
+ L VL G+ +LP+
Sbjct: 1160 AQLRARGSSLLVLHGEPRVVLPR 1182
>UniRef50_A7P7Q6 Cluster: Chromosome chr9 scaffold_7, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr9 scaffold_7, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 547
Score = 47.2 bits (107), Expect = 3e-04
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAE--NRKHLLRPIYFL--DPNI----KDKVGINRLR 402
+S WFR LRIHDN AL++A E+ ++ P YF+ DPN + G+NR+R
Sbjct: 6 SSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDP-YFMEPDPNAFSPGSSRAGLNRIR 64
Query: 403 FLLQSLEXXXXXXXXXXTCLYVLRG 477
FLL+SL + L VL+G
Sbjct: 65 FLLESLVDLDSSLRQLGSRLLVLKG 89
>UniRef50_A7D5J0 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep:
Deoxyribodipyrimidine photo-lyase - Halorubrum
lacusprofundi ATCC 49239
Length = 514
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
W R DLR+ DN+ L A ++ + P++ DP++ D R+R LL L
Sbjct: 5 WHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVLDHASDVRVRRLLDGLAALRDD 64
Query: 439 XXXXXTCLYVLRGKAVDLLPKL 504
+ L V RG +LP+L
Sbjct: 65 YRDRGSDLLVARGAPETVLPEL 86
>UniRef50_O48652 Cluster: 6-4 photolyase; n=3; Arabidopsis
thaliana|Rep: 6-4 photolyase - Arabidopsis thaliana
(Mouse-ear cress)
Length = 537
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD-----------KVGINRLRF 405
WFR LR+HDN AL A +E + P++ +DP+ + + G+NR+RF
Sbjct: 10 WFRKGLRVHDNPALEYASKGSE----FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 65
Query: 406 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLL 495
LL+SL+ + L V +G+ ++L
Sbjct: 66 LLESLKDLDSSLKKLGSRLLVFKGEPGEVL 95
>UniRef50_A4QZX5 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 614
Score = 44.8 bits (101), Expect = 0.002
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLRFLL--QSLE 423
+WFR DLR+HD+ AL+ A+ + +L PI+ DP+ + + G+NR ++LL Q+
Sbjct: 8 YWFRTDLRLHDSPALQAAL---DLDPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQNDL 64
Query: 424 XXXXXXXXXXTCLYVLRGKAVDLLPKLFVTGK 519
+ L+VLR L PKLF K
Sbjct: 65 SASITNLNPRSKLFVLREAPQSLFPKLFKAWK 96
>UniRef50_A5UYV1 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;
Roseiflexus sp. RS-1|Rep: Deoxyribodipyrimidine
photo-lyase - Roseiflexus sp. RS-1
Length = 491
Score = 43.6 bits (98), Expect = 0.004
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEXX 429
HWFR DLR+ DN AL A + R + P++ LD I + G+ R+ F++ +L
Sbjct: 5 HWFRRDLRLRDNPALSGAAARSGGR---VIPLFILDDAILHAPRTGMARVAFMIAALRDL 61
Query: 430 XXXXXXXXTCLYVLRGKAVDLLPKL 504
+ L V RG+ D+L L
Sbjct: 62 DASLRARGSRLVVRRGRPSDVLRDL 86
>UniRef50_Q7ZYX5 Cluster: Cry4 protein; n=13; Euteleostomi|Rep: Cry4
protein - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 579
Score = 43.2 bits (97), Expect = 0.005
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD---KVGINRLRFLLQSLEX 426
H FR LR+HDN +L A+ + L P+Y LD +G R RFLLQSLE
Sbjct: 28 HLFRKGLRLHDNPSLLGALASSST----LYPVYVLDRVFLQGAMHMGALRWRFLLQSLED 83
Query: 427 XXXXXXXXXTCLYVLRGKAVDLLPKL 504
+ L+VL G ++L +L
Sbjct: 84 LDTRLRAIGSRLFVLCGSTANILREL 109
>UniRef50_Q0IDI4 Cluster: Deoxyribodipyrimidine photolyase; n=10;
Synechococcus|Rep: Deoxyribodipyrimidine photolyase -
Synechococcus sp. (strain CC9311)
Length = 492
Score = 43.2 bits (97), Expect = 0.005
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALR--NAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXX 432
W R DLR+ DNL L+ AI+ A ++L P P + RL FL++SL
Sbjct: 9 WHRRDLRLADNLGLQAAEAISPAVTGVYVLDPALIQPPESLPPMAPARLWFLVESLRELQ 68
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
+ L V+ G V LLP+L
Sbjct: 69 QRWRDVGSRLLVVAGDPVQLLPRL 92
>UniRef50_O77059 Cluster: CG3772-PA; n=15; Coelomata|Rep: CG3772-PA
- Drosophila melanogaster (Fruit fly)
Length = 542
Score = 42.7 bits (96), Expect = 0.007
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 423
WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFLL SL+
Sbjct: 10 WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQ 65
>UniRef50_A3J6I6 Cluster: Deoxyribodipyrimidine photolyase; n=4;
Flavobacteriales|Rep: Deoxyribodipyrimidine photolyase -
Flavobacteria bacterium BAL38
Length = 486
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINR--LRFLLQSLEXXX 432
WF+ DLR+HD+ AL A+ + + K LL +Y +P++ + ++ F+ QSLE
Sbjct: 5 WFKRDLRLHDHEALHEAL--STSGKTLL--LYIFEPSLMKDIHYSQRHFDFIKQSLEALQ 60
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
T + +++G+AV + KL
Sbjct: 61 KELQKYHTQILIIQGEAVPVFQKL 84
>UniRef50_Q11W86 Cluster: Deoxyribodipyrimidine photolyase; n=2;
Bacteroidetes|Rep: Deoxyribodipyrimidine photolyase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 434
Score = 41.9 bits (94), Expect = 0.012
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLD-------PNIKDKVGINRLRFLLQS 417
WF+ DLR+HDN L AI +++ + P+Y LD P K G R +FLL+S
Sbjct: 7 WFKTDLRLHDNETLVRAIEQSDE----IIPVYCLDEDHFKITPFGFQKTGNFRAQFLLES 62
Query: 418 LEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
L + L V+RGK L K+
Sbjct: 63 LNDLDTNLRKLGSGLIVVRGKPETELYKI 91
>UniRef50_Q116U8 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Trichodesmium erythraeum IMS101|Rep:
Deoxyribodipyrimidine photolyase - Trichodesmium
erythraeum (strain IMS101)
Length = 474
Score = 41.9 bits (94), Expect = 0.012
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEXXX 432
W R DLRI DN+ L A E + + I+ LD NI +D + R+ +++ L+
Sbjct: 8 WHRRDLRISDNVGLTQASQEGQT----VVGIFCLDENILKRDDIASARVTYMIGCLQHLQ 63
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
+ L ++ GK ++ +PKL
Sbjct: 64 KRYKQIGSQLLIMSGKPIEAIPKL 87
>UniRef50_Q1RKC7 Cluster: Deoxyribodipyrimidine photo-lyase; n=2;
Rickettsia bellii|Rep: Deoxyribodipyrimidine photo-lyase
- Rickettsia bellii (strain RML369-C)
Length = 475
Score = 41.1 bits (92), Expect = 0.022
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +1
Query: 241 NPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKV---GINRLRFLL 411
N S W R +LR+HDN + A+ ++ + PI+ D I ++ RL FL
Sbjct: 2 NKTSIVWLRRNLRLHDNKSFAAALRNSDK----ILPIFIFDTTILERFKNPHDRRLSFLA 57
Query: 412 QSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFVTGK 519
+L L V GK +D++PKL T K
Sbjct: 58 NTLCLINDELKKLKGKLLVFYGKPLDIIPKLAATLK 93
>UniRef50_A1ZPZ8 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Microscilla marina ATCC 23134|Rep: Deoxyribodipyrimidine
photolyase - Microscilla marina ATCC 23134
Length = 483
Score = 41.1 bits (92), Expect = 0.022
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD-------KVGINRLRFLLQS 417
WFR DLR+HDN L A ++A+ L P+Y DP + K G +R +FL+++
Sbjct: 18 WFRNDLRVHDNDVLAKAASDAD----YLLPVYCFDPRQYETTSLGFAKTGAHRAQFLIET 73
Query: 418 LEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
L + L + GK +++ L
Sbjct: 74 LANLRANLEAKGSGLVIRIGKPEEVIADL 102
>UniRef50_UPI0000E87D35 Cluster: deoxyribodipyrimidine photo-lyase;
n=1; Methylophilales bacterium HTCC2181|Rep:
deoxyribodipyrimidine photo-lyase - Methylophilales
bacterium HTCC2181
Length = 465
Score = 40.7 bits (91), Expect = 0.029
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI---NRLRFLLQSLEXX 429
WFR DLR+HDN AL +A+++++N + ++ D NI + + R+ F+ ++L
Sbjct: 2 WFRRDLRLHDNHALHHALSQSDN----VYCVFIFDKNILNDLKSKEDQRIEFIWEALSEM 57
Query: 430 XXXXXXXXTCLYVLRGKAVDLLPKL 504
+ + V+ G + +P L
Sbjct: 58 KASLNSLSSDITVIHGDPIHAIPLL 82
>UniRef50_Q2BAD6 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Bacillus sp. NRRL B-14911|Rep: Deoxyribodipyrimidine
photolyase - Bacillus sp. NRRL B-14911
Length = 474
Score = 40.7 bits (91), Expect = 0.029
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP-NIKDKVGINRLRFLLQSLEXXXX 435
WFR DLRIHD+ L A AE + P+Y +P + + +V ++F + LE
Sbjct: 5 WFRKDLRIHDHRPLAEACASAEE----VIPLYIAEPLSGRKEVSRRHIQFAAEGLEQLDE 60
Query: 436 XXXXXXTCLYVLRGKAVDLLPKL 504
L+ +G +D+L +L
Sbjct: 61 GLRGLGGRLFAAQGTIIDILEEL 83
>UniRef50_A2R6W6 Cluster: Cofactor: FAD; n=1; Aspergillus niger|Rep:
Cofactor: FAD - Aspergillus niger
Length = 567
Score = 40.7 bits (91), Expect = 0.029
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Frame = +1
Query: 244 PNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLRFLL-- 411
P W R DLR+HDN AL+ A+ + N + PI+ DP+ + +VG NR RFLL
Sbjct: 7 PTVIFWHRTDLRLHDNPALQAAL--SLNPSTFI-PIFTWDPHYAYQVRVGPNRWRFLLEC 63
Query: 412 QSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
Q+ L+V+R + PKLF
Sbjct: 64 QNDLSQSYRKLNPKQKLWVVREAPQTVFPKLF 95
>UniRef50_A1CJL8 Cluster: DNA photolyase, putative; n=4;
Pezizomycotina|Rep: DNA photolyase, putative -
Aspergillus clavatus
Length = 613
Score = 39.9 bits (89), Expect = 0.050
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +1
Query: 244 PNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLRFLL-- 411
P +W R DLR+HD+ AL A+ A N + PI+ DP+ + +VG NR +FLL
Sbjct: 3 PVVLYWHRTDLRLHDSPALHAAL--ALN-PSIFIPIWTWDPHYVYRTRVGPNRWKFLLEC 59
Query: 412 QSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
QS L+V+R +LPKL+
Sbjct: 60 QSDLSAAYTTLNPKQRLWVVREAPQSVLPKLW 91
>UniRef50_A1SER8 Cluster: Deoxyribodipyrimidine photo-lyase; n=12;
Actinomycetales|Rep: Deoxyribodipyrimidine photo-lyase -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 453
Score = 39.5 bits (88), Expect = 0.066
Identities = 27/81 (33%), Positives = 37/81 (45%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
WFR DLR+ DN AL A + + P++ LDP + G R +L SL
Sbjct: 10 WFRRDLRLADNPALVEAAADGP-----VLPLFVLDPVLWGPAGAARRAYLGASLRALDAS 64
Query: 439 XXXXXTCLYVLRGKAVDLLPK 501
T L V+RG L+P+
Sbjct: 65 LRERGTRLSVVRGDPARLVPR 85
>UniRef50_A0M4X6 Cluster: Cryptochrome-like DNA photolyase family
protein; n=6; Flavobacteriales|Rep: Cryptochrome-like
DNA photolyase family protein - Gramella forsetii
(strain KT0803)
Length = 438
Score = 39.5 bits (88), Expect = 0.066
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKD-----KVGINRLRFLLQS 417
WFR DLRI D+ AL A N E + IY DP +KD K G R +FL+++
Sbjct: 17 WFRNDLRISDHEALTTACNSHEK----IIGIYCFDPRHYLKDQFGFIKTGKFRSKFLIET 72
Query: 418 LEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
+E L V + K D++P++
Sbjct: 73 IEELQKNLETLNIELLVFQEKPEDIIPEI 101
>UniRef50_Q652J5 Cluster: Deoxyribodipyrimidine photolyase family
protein-like; n=3; Oryza sativa|Rep:
Deoxyribodipyrimidine photolyase family protein-like -
Oryza sativa subsp. japonica (Rice)
Length = 695
Score = 39.5 bits (88), Expect = 0.066
Identities = 28/82 (34%), Positives = 40/82 (48%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
WF+ DLR+ D+ L A+ AE R+ +L P+Y D I D L LL +LE
Sbjct: 49 WFKHDLRVDDHPGLAAAV-AAEPRRPVL-PLYVFDRRILDGYSDTMLELLLFALEDLKMV 106
Query: 439 XXXXXTCLYVLRGKAVDLLPKL 504
+ L + G A D++ KL
Sbjct: 107 LKSQESDLLIGLGNAEDVVLKL 128
>UniRef50_Q8LB72 Cluster: Blue-light photoreceptor PHR2; n=2;
Arabidopsis thaliana|Rep: Blue-light photoreceptor PHR2
- Arabidopsis thaliana (Mouse-ear cress)
Length = 447
Score = 38.7 bits (86), Expect = 0.12
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK-------DKVGINRLRFLLQS 417
WFR DLR+HDN L +A +E + + P+Y DP DK G R +FL++S
Sbjct: 120 WFRNDLRVHDNECLNSANDECVS----VLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 418 LEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
+ + L V GK +L +L
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVEL 204
>UniRef50_Q15ZK4 Cluster: Deoxyribodipyrimidine photolyase; n=2;
Alteromonadales|Rep: Deoxyribodipyrimidine photolyase -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 445
Score = 38.3 bits (85), Expect = 0.15
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENR---KHLLRPIYFLDPNIKD-KVGINRLRFLLQSLEX 426
WFR DLR+HDN AL A++E + ++ P +F + + +G R FL QSL
Sbjct: 15 WFRHDLRLHDNPAL-VALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQSLSE 73
Query: 427 XXXXXXXXXTCLYVLRGKAVDLLPKL 504
L+VL G+ +++L L
Sbjct: 74 LQRHLQEQGQQLFVLEGETLEVLDAL 99
>UniRef50_A4A625 Cluster: Deoxyribodipyrimidine photolyase; n=2;
unclassified Gammaproteobacteria|Rep:
Deoxyribodipyrimidine photolyase - Congregibacter
litoralis KT71
Length = 434
Score = 37.5 bits (83), Expect = 0.27
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXX 435
+WFR DLR+HDN L A E L P+ N + +G R RF+ +SL+
Sbjct: 5 YWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQG-LGEQRERFITESLKALQD 63
Query: 436 XXXXXXTCLYVLRGKAVDLLPKL 504
L VL+G ++P L
Sbjct: 64 DLQPLGQSLLVLQGSPELVIPDL 86
>UniRef50_A0Y3K3 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Alteromonadales bacterium TW-7|Rep:
Deoxyribodipyrimidine photolyase - Alteromonadales
bacterium TW-7
Length = 436
Score = 37.1 bits (82), Expect = 0.35
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +1
Query: 256 HWFRLDLRIHDN-LALRNAINE-AENRKHLLRPIYFLDPNIKDK-VGINRLRFLLQSLEX 426
+W + DLR++DN + + A+ + A + ++ P +F + N + K G N+ FL+QSL
Sbjct: 7 YWLKNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLYE 66
Query: 427 XXXXXXXXXTCLYVLRGKAVDLL 495
L+VL G+ V +L
Sbjct: 67 LQQALIARGQTLHVLEGEPVSVL 89
>UniRef50_Q23DL8 Cluster: FAD binding domain of DNA photolyase
family protein; n=9; cellular organisms|Rep: FAD binding
domain of DNA photolyase family protein - Tetrahymena
thermophila SB210
Length = 486
Score = 37.1 bits (82), Expect = 0.35
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 250 SYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKV 384
S WFR DLR++DN AL NA+ +++N + P++ D I DK+
Sbjct: 58 SIFWFRRDLRLNDNTALYNAL-KSQNE---VVPLFIFDTEILDKL 98
>UniRef50_Q83CE4 Cluster: Deoxyribodipyrimidine photolyase-class I;
n=4; Coxiella burnetii|Rep: Deoxyribodipyrimidine
photolyase-class I - Coxiella burnetii
Length = 472
Score = 36.7 bits (81), Expect = 0.47
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
WFR DLR+ DN AL + A++ HL+ P+Y LD +K +G + +L SL
Sbjct: 6 WFRQDLRLSDNPAL---VEAAKSADHLI-PLYILDDQLK-MLGDAQRWWLHHSLSSLQTA 60
Query: 439 XXXXXTCLYVLRGKAVDLLPKL 504
T L + +G +L +L
Sbjct: 61 LSKKGTSLILKKGDTKRVLLEL 82
>UniRef50_A0YV59 Cluster: Deoxyribodipyrimidine photolyase; n=4;
Cyanobacteria|Rep: Deoxyribodipyrimidine photolyase -
Lyngbya sp. PCC 8106
Length = 512
Score = 36.7 bits (81), Expect = 0.47
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEXXX 432
WFR DLR+ DN + + +A + P + +DP + +G R++FL +SL
Sbjct: 5 WFRRDLRLIDN----DIVAQAAATDEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACLD 60
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
+ LY+ G +V+++ L
Sbjct: 61 GSLRDLGSRLYLFEGNSVEVIQTL 84
>UniRef50_P27526 Cluster: Deoxyribodipyrimidine photo-lyase; n=16;
Pezizomycotina|Rep: Deoxyribodipyrimidine photo-lyase -
Neurospora crassa
Length = 642
Score = 36.7 bits (81), Expect = 0.47
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD---KVGINRLRFLLQSLE 423
HWF++DLR+HDN +L A +A+ L +Y L P + + I R+ F+L++LE
Sbjct: 139 HWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPI-RVDFMLRTLE 196
>UniRef50_Q1W7G4 Cluster: DNA photolyase protein; n=22;
Magnoliophyta|Rep: DNA photolyase protein - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 189
Score = 36.3 bits (80), Expect = 0.62
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK-------DKVGINRLRFLLQS 417
WFR DLR+HDN +N A N + +Y DP DK G R FL+ S
Sbjct: 1 WFRNDLRVHDN----ECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDS 56
Query: 418 LEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
+ + L V GK +L +L
Sbjct: 57 VADLRKNLQARGSDLVVRIGKPETVLVEL 85
>UniRef50_Q5V438 Cluster: Photolyase/cryptochrome; n=3;
Halobacteriaceae|Rep: Photolyase/cryptochrome -
Haloarcula marismortui (Halobacterium marismortui)
Length = 464
Score = 36.3 bits (80), Expect = 0.62
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
W + DLRI DN L A + E + P+Y LD ++ +G + FLL +
Sbjct: 13 WHQRDLRIPDNRGLTAAAADDE-----VLPVYVLDTDLLANIGKRQKAFLLAGVRALKQA 67
Query: 439 XXXXXTCLYVLRGKAVDLL 495
L V +G AVD+L
Sbjct: 68 YRDHGGELLVKKGTAVDVL 86
>UniRef50_A3D723 Cluster: Deoxyribodipyrimidine photo-lyase; n=8;
Alteromonadales|Rep: Deoxyribodipyrimidine photo-lyase -
Shewanella baltica OS155
Length = 505
Score = 35.9 bits (79), Expect = 0.82
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1
Query: 235 VQNPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP 366
VQ N+ WFR DLR+ DN AL A + A L+ IY P
Sbjct: 22 VQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATP 65
>UniRef50_A0LR66 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;
Acidothermus cellulolyticus 11B|Rep:
Deoxyribodipyrimidine photo-lyase - Acidothermus
cellulolyticus (strain ATCC 43068 / 11B)
Length = 497
Score = 35.9 bits (79), Expect = 0.82
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLE 423
+WFR DLR+ D+ AL A A + P++ +DP G NR +FL LE
Sbjct: 35 YWFRRDLRLADSPALVAAARAAGAEP--IVPLFVVDPRAGRGAGPNRWQFLASCLE 88
>UniRef50_A7P504 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=4; Magnoliophyta|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 564
Score = 35.9 bits (79), Expect = 0.82
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--------KDKVGINRLRFLLQ 414
WFR DLR+ DN AL A ++ + P+Y +DP + K G R +FL++
Sbjct: 93 WFRNDLRVLDNEALVKAWASSQ----AVLPVYCVDPRLFGTTHYFGFPKTGALRAQFLIE 148
Query: 415 SLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFVT 513
L L + GK ++LP L T
Sbjct: 149 CLADLKRNLMNRGLNLLIQHGKPEEILPSLAKT 181
>UniRef50_Q98RW5 Cluster: Putative uncharacterized protein orf272;
n=1; Guillardia theta|Rep: Putative uncharacterized
protein orf272 - Guillardia theta (Cryptomonas phi)
Length = 272
Score = 35.5 bits (78), Expect = 1.1
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
WFR DLRI+DN + + + N + L +Y D N +L FL QS+E
Sbjct: 70 WFRYDLRINDNKLIE--LLKTNNNDYYL--VYCFDKNEIKNYSKKKLTFLKQSVETLRDN 125
Query: 439 XXXXXTCLYVLRGKAVDLLPKL 504
L ++ G ++ + L
Sbjct: 126 LRKLEYNLMIMEGDSISVFKNL 147
>UniRef50_Q4KML2 Cluster: Cryptochrome DASH; n=11; cellular
organisms|Rep: Cryptochrome DASH - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 520
Score = 35.5 bits (78), Expect = 1.1
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 265 RLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--------KVGINRLRFLLQSL 420
R DLR+HDN A AE H++ P+Y DP K G RLRFLL S+
Sbjct: 12 RNDLRLHDNEVFHWAQRNAE---HII-PLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSV 67
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
+ + L V +GK D++ +L
Sbjct: 68 KDLRALLKKHGSTLLVRQGKPEDVVCEL 95
>UniRef50_Q84KJ5 Cluster: Cryptochrome DASH,
chloroplast/mitochondrial precursor; n=8;
Magnoliophyta|Rep: Cryptochrome DASH,
chloroplast/mitochondrial precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 569
Score = 35.5 bits (78), Expect = 1.1
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--------KDKVGINRLRFLLQ 414
WFR DLR+ DN AL A + ++ + P+Y LDP + K G R FL++
Sbjct: 89 WFRNDLRVLDNDALYKAWSSSDT----ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 144
Query: 415 SLEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
L L + GK ++LP L
Sbjct: 145 CLVDLRKNLMKRGLNLLIRSGKPEEILPSL 174
>UniRef50_Q46H89 Cluster: Deoxyribodipyrimidine photolyase; n=7;
Prochlorococcus marinus|Rep: Deoxyribodipyrimidine
photolyase - Prochlorococcus marinus (strain NATL2A)
Length = 493
Score = 35.1 bits (77), Expect = 1.4
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +1
Query: 250 SYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD---KVGINRLRFLLQSL 420
S W R DLR DN+ L A ++N K L+ +Y LDP + D + FL +SL
Sbjct: 6 SIFWHRRDLRFGDNIGLFEA---SKNSKSLI-GVYVLDPKLLDLNRTTSEAKNWFLGESL 61
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
+ L +L G ++L+ KL
Sbjct: 62 IELQKNWEIRGSRLLILNGDPIELISKL 89
>UniRef50_A3JAL3 Cluster: Deoxyribodipyrimidine photolyase; n=4;
Bacteria|Rep: Deoxyribodipyrimidine photolyase -
Marinobacter sp. ELB17
Length = 441
Score = 35.1 bits (77), Expect = 1.4
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAI-NEAENRKHLLRPIYFLDPNIKDK-VGINRLRFLLQSLEXX 429
+WF DLR+HDN AL A ++ +++ P +F ++ K +G +R RFL QSL
Sbjct: 5 YWFTRDLRLHDNAALLAASKSDMLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQSLIGL 64
Query: 430 XXXXXXXXTCLYVLRGKAVDLLPKL 504
L++ G ++P L
Sbjct: 65 ERSLRALGQRLHIAWGDPETVIPAL 89
>UniRef50_Q6ML17 Cluster: Deoxyribodipyrimidine photolyase-class I;
n=1; Bdellovibrio bacteriovorus|Rep:
Deoxyribodipyrimidine photolyase-class I - Bdellovibrio
bacteriovorus
Length = 435
Score = 34.7 bits (76), Expect = 1.9
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI---KDKVGINRLRFLLQSLEXX 429
WFR DLR+ DN L +A+ E + + P++ D I D R+ F+ + ++
Sbjct: 8 WFRRDLRLDDNAGLYHALKE----RSAVLPLFIFDSEILENLDDPADARVTFIYEQIQDM 63
Query: 430 XXXXXXXXTCLYVLRGKAVDLLPKL 504
+ L V GK +++L L
Sbjct: 64 KQQLNAKKSDLIVRHGKPLEVLKTL 88
>UniRef50_Q0BXN5 Cluster: Deoxyribodipyrimidine photolyase family
protein; n=2; Rhodobacterales|Rep: Deoxyribodipyrimidine
photolyase family protein - Hyphomonas neptunium (strain
ATCC 15444)
Length = 536
Score = 34.7 bits (76), Expect = 1.9
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLRFLLQSLEXXX 432
WF+ DLR+HD+ AL A+ + P+Y +P + + F+ SLE
Sbjct: 14 WFKRDLRVHDHAALAAAVASGAP----ILPLYIFEPGYWALPEHSRRQFDFVRDSLEELD 69
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
T L + G A+D+ L
Sbjct: 70 AALKARGTKLVIRMGSAIDVFSAL 93
>UniRef50_Q2JW81 Cluster: Deoxyribodipyrimidine photolyase; n=2;
Cyanobacteria|Rep: Deoxyribodipyrimidine photolyase -
Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 479
Score = 34.3 bits (75), Expect = 2.5
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI--NRLRFLLQSLE 423
W R DLR+ DN AL A R + P++ DP + + + R+ FLLQ+L+
Sbjct: 8 WHRRDLRLGDNTALHG----AAQRSPQVVPVFVFDPQLLQRADMAPARVAFLLQALQ 60
>UniRef50_A5GQG9 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Synechococcus sp. RCC307|Rep: Deoxyribodipyrimidine
photolyase - Synechococcus sp. (strain RCC307)
Length = 467
Score = 34.3 bits (75), Expect = 2.5
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALR--NAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXX 432
W R DLR+ DNL L +AI +L P P + R FLL+SL
Sbjct: 7 WHRRDLRLADNLGLAAVSAITPEVMGVFVLDPAELEHPTMAPA----RRWFLLESLRELQ 62
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
+ L +L G V+LLP+L
Sbjct: 63 QRWRQAGSQLLLLEGNPVELLPRL 86
>UniRef50_A4BJR5 Cluster: Putative deoxyribodipyrimidine photolyase;
n=1; Reinekea sp. MED297|Rep: Putative
deoxyribodipyrimidine photolyase - Reinekea sp. MED297
Length = 465
Score = 34.3 bits (75), Expect = 2.5
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYF 357
WFR DLR+ D+ AL A+N A+ ++ +R ++F
Sbjct: 6 WFRNDLRVSDHEALFQALNRAKQQQTPVRALFF 38
>UniRef50_Q95UQ7 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;
Branchiostoma belcheri|Rep: Deoxyribodipyrimidine
photo-lyase - Branchiostoma belcheri (Amphioxus)
Length = 202
Score = 34.3 bits (75), Expect = 2.5
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +1
Query: 256 HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXX 435
+W D R+ DN AL A A + L + L P + I F+L+ LE
Sbjct: 123 YWMSRDQRVQDNWALLYAQQLAMKHQVPLYVCFCLVPKFLE-ASIRHYGFMLKGLEEVER 181
Query: 436 XXXXXXTCLYVLRGKAVDLLP 498
++L G AVD+LP
Sbjct: 182 ELQSLDISFHLLTGYAVDVLP 202
>UniRef50_Q6CSJ7 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome D of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 595
Score = 34.3 bits (75), Expect = 2.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 235 VQNPNSYHWFRLDLRIHDNLALRNAINEAEN 327
V N HWFR DLR+ DN L A+N++++
Sbjct: 67 VDNRLVIHWFRGDLRVRDNTGLAYALNQSKS 97
>UniRef50_Q2S3C6 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Salinibacter ruber DSM 13855|Rep: Deoxyribodipyrimidine
photolyase - Salinibacter ruber (strain DSM 13855)
Length = 483
Score = 33.9 bits (74), Expect = 3.3
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP-----NIKD--KVGINRLRFLLQS 417
W R DLR+ D+ LR A + + + P+Y DP + D K+ R RFL +S
Sbjct: 8 WIRNDLRVRDHAPLRYAADHYDQ----VIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 418 LEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
++ L V G+ D+LP+L
Sbjct: 64 VQDLRDSVQDLGADLVVRGGRPEDILPEL 92
>UniRef50_Q2FRR1 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Methanospirillum hungatei JF-1|Rep:
Deoxyribodipyrimidine photolyase - Methanospirillum
hungatei (strain JF-1 / DSM 864)
Length = 448
Score = 33.9 bits (74), Expect = 3.3
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +1
Query: 232 NVQNPN-SY--HWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR 402
N Q P SY +W + +R N AL AI + K L ++ LD + + ++ R
Sbjct: 11 NNQEPKGSYILYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPVH-YR 69
Query: 403 FLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
FL + L+ +L G VD++P++
Sbjct: 70 FLWEGLQDVNRSLTERGIGFQILSGSPVDIIPRI 103
>UniRef50_Q6NKC0 Cluster: Putative riboflavin biosynthesis protein;
n=1; Corynebacterium diphtheriae|Rep: Putative
riboflavin biosynthesis protein - Corynebacterium
diphtheriae
Length = 446
Score = 33.5 bits (73), Expect = 4.4
Identities = 26/82 (31%), Positives = 34/82 (41%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXX 438
WFR DLR+HDN AL A L +Y + +G +L SL
Sbjct: 8 WFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLALSEQ 67
Query: 439 XXXXXTCLYVLRGKAVDLLPKL 504
L+VL G + LLP+L
Sbjct: 68 LAQRGVRLHVLSGDPLTLLPQL 89
>UniRef50_Q47SJ5 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Thermobifida fusca YX|Rep: Deoxyribodipyrimidine
photolyase - Thermobifida fusca (strain YX)
Length = 419
Score = 33.5 bits (73), Expect = 4.4
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 262 FRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSL 420
F DLR+ D+ AL A+ EA+ + P++ +DP + NR+ +LL++L
Sbjct: 8 FTRDLRVSDHPALHAAVTEADR----VVPLFVVDPALVRVSARNRIAYLLEAL 56
>UniRef50_A4IYV0 Cluster: Deoxyribodipyrimidine photolyase; n=14;
Bacteria|Rep: Deoxyribodipyrimidine photolyase -
Francisella tularensis subsp. tularensis (strain
WY96-3418)
Length = 499
Score = 33.5 bits (73), Expect = 4.4
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR--FLLQSLEXXX 432
WF+ DLR+ DNLAL A + + + P+Y ++ + + ++ + FL + LE
Sbjct: 5 WFKRDLRVTDNLALSLASEKGD-----ILPLYIIELELWQQPDMSHRQYLFLSECLEELN 59
Query: 433 XXXXXXXTCLYVLRGKAVDLLPKL 504
L ++ G AV++ +L
Sbjct: 60 TELTKLGQSLAIMLGDAVEIFEQL 83
>UniRef50_Q1G0Y2 Cluster: Cryptochrome dash; n=1; Karenia
brevis|Rep: Cryptochrome dash - Karenia brevis
(Dinoflagellate)
Length = 523
Score = 33.5 bits (73), Expect = 4.4
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 259 WFRLDLRIHDNLALRNAINEAENRK--HLLRPIYFLDPNIKD--KVGINRLRFLLQSL 420
WFR DLR+ D AL A +A + ++ P F+D + K R RFL++SL
Sbjct: 24 WFRTDLRLDDQPALSTACEDALSLLPIYVFDPAKFIDLTLAGARKSSARRARFLIESL 81
>UniRef50_Q1VSH4 Cluster: Deoxyribodipyrimidine photolyase-class I;
n=13; Bacteroidetes|Rep: Deoxyribodipyrimidine
photolyase-class I - Psychroflexus torquis ATCC 700755
Length = 457
Score = 33.1 bits (72), Expect = 5.8
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 223 KE*NVQNPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGIN--R 396
K+ ++N WFR D+R+ DN+ L +A++ + + P++ D NI +++ + R
Sbjct: 19 KQFKMKNKVRVFWFRRDMRLEDNVGLYHALSGVFS----VVPLFIFDKNILNELQEDDAR 74
Query: 397 LRFLLQSLE 423
+ F+ + L+
Sbjct: 75 ISFIFEQLQ 83
>UniRef50_Q6L055 Cluster: Deoxyribodipyrimidine photolyase; n=1;
Picrophilus torridus|Rep: Deoxyribodipyrimidine
photolyase - Picrophilus torridus
Length = 431
Score = 33.1 bits (72), Expect = 5.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 262 FRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXXXXXX 441
FR DLR++DN AL ++N ++ P + + + +N F++ SL
Sbjct: 6 FRRDLRLYDNTALLKSLNNETATIFIMDPAQVKNNEYRSEKALN---FMISSLYDLMTDI 62
Query: 442 XXXXTCLYVLRGKAVDLLPKL 504
L V G VD+L +L
Sbjct: 63 EGNHGKLAVFHGDPVDVLKRL 83
>UniRef50_A4FX87 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Methanococcus|Rep: DegT/DnrJ/EryC1/StrS
aminotransferase - Methanococcus maripaludis
Length = 372
Score = 33.1 bits (72), Expect = 5.8
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +1
Query: 166 LQNKNLSFVSAKLIILHSLKE*NVQNPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLR 345
++ KN +++ L + +K NV+N N+Y ++L + +N LR + + N+K +
Sbjct: 256 MRRKNAEYLNKNLNEIKGVKTINVEN-NNYAVYQLYSILLENTELRGELIQFLNKKEISS 314
Query: 346 PIYFLDP 366
IYF DP
Sbjct: 315 KIYF-DP 320
>UniRef50_P25078 Cluster: Deoxyribodipyrimidine photo-lyase; n=43;
Gammaproteobacteria|Rep: Deoxyribodipyrimidine
photo-lyase - Salmonella typhimurium
Length = 473
Score = 33.1 bits (72), Expect = 5.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 244 PNSYHWFRLDLRIHDNLALRNAINEAENR 330
P WFR DLR+ DNLAL A +A R
Sbjct: 2 PTHLVWFRRDLRLQDNLALAAACRDASAR 30
>UniRef50_A4M6R0 Cluster: Deoxyribodipyrimidine photo-lyase; n=1;
Petrotoga mobilis SJ95|Rep: Deoxyribodipyrimidine
photo-lyase - Petrotoga mobilis SJ95
Length = 462
Score = 32.7 bits (71), Expect = 7.6
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = +1
Query: 211 LHSLKE*NVQNPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDK--V 384
L +K N + H FR DLR+ DN +L A+ E ++ F D IKD
Sbjct: 5 LEVIKISNYKYKIGLHIFRRDLRLEDNTSLIEALQSCE---RVIPAFIFDDRQIKDNDYK 61
Query: 385 GINRLRFLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFVT 513
N ++F++ L+ LY G ++ L T
Sbjct: 62 SDNAVQFMIACLKELNDQLHQLNARLYFFEGLTAKVVESLIKT 104
>UniRef50_A4GI46 Cluster: Deoxyribodipyrimidine photolyase; n=2;
Bacteria|Rep: Deoxyribodipyrimidine photolyase -
uncultured marine bacterium EB0_41B09
Length = 424
Score = 32.7 bits (71), Expect = 7.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 250 SYHWFRLDLRIHDNLALRNAINEAE 324
S +WFR DLR+ DNL+L AI ++
Sbjct: 3 SIYWFRNDLRVIDNLSLNEAIESSD 27
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,279,755
Number of Sequences: 1657284
Number of extensions: 9774390
Number of successful extensions: 20402
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 19736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20375
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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