Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0594
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   9.1  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 268 LDLRIHDNLALRNAINEAENRKHLLRP---IYFLDPNIKDKVGINRLRFLLQSLE 423
           +D  I   L LRN++   EN KH+ +    I  L+ +I+     N L FL   L+
Sbjct: 313 MDRAIGIALVLRNSVLSVENAKHVAQTKLVISVLEASIRCAKTFNNLEFLHYCLD 367


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 625 SSLLMNTPFFSAMSSMYSSCCTNSGSIST 539
           S+   +T F S  SS YS+  T+S ++ST
Sbjct: 663 STATSSTSFASESSSFYSNVTTSSSTVST 691


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 540 VDIDPEFVQQDEYIEDIAEKKGVFINKEE 626
           V ID EFV  DEYI +  E  G +I+ E+
Sbjct: 274 VIIDSEFVLIDEYIHEDTEALG-YIHMED 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,206
Number of Sequences: 5004
Number of extensions: 46888
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)