Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0594
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946...    39   0.004
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    36   0.020
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    31   1.0  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   5.4  
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    27   9.4  
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982...    27   9.4  

>06_03_1012 -
           26893828-26894052,26894137-26894355,26894513-26894652,
           26894790-26895198
          Length = 330

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK---------DKVGINRLRFLL 411
           WFR DLR+ DN     A+  A      + P+Y +DP I           K G  R +FL+
Sbjct: 89  WFRNDLRVLDN----EAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 144

Query: 412 QSLEXXXXXXXXXXTCLYVLRGKAVDLLPKL 504
           + LE            L +  GK  D+LP +
Sbjct: 145 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSI 175


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI-----------KDKVGINRLRF 405
           WFR  LR+HDN AL  A       +  L P++ LDP               + G+ R+RF
Sbjct: 18  WFRKGLRVHDNPALDAARRGGAAAR--LYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75

Query: 406 LLQSLEXXXXXXXXXXTCLYVLRGK 480
           LL+SL           + L +LR +
Sbjct: 76  LLESLSDLDARLRRLGSRLLLLRAR 100


>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD 378
           WF+ DLR+ D+  L  A+  AE R+ +L P+Y  D  I D
Sbjct: 49  WFKHDLRVDDHPGLAAAV-AAEPRRPVL-PLYVFDRRILD 86


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINE 318
           WFR DLRI DN AL +A  +
Sbjct: 10  WFRRDLRIDDNPALASAARD 29


>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 253 YHWFRLDLRIHDNLALRNAINEAENRKHLL--RPIYFLDPNIKDKVGINRLRFLLQSL 420
           YH   LD+    N+++  A+N     +HL+    ++F    + + + + +L+F +Q++
Sbjct: 659 YHLQVLDVGFSGNISVPAAMNNLVKLRHLIADAKVHFSIGGVGNMISLQKLKFKVQNI 716


>02_04_0317 +
           21996324-21996681,21996833-21996859,21997299-21998227,
           21998317-21999162
          Length = 719

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEA 321
           WFR DLR+ DN AL  A   A
Sbjct: 23  WFRRDLRVEDNPALAAAARAA 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,432
Number of Sequences: 37544
Number of extensions: 241981
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)