Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0594
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    67   5e-13
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    47   6e-07

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 66.9 bits (156), Expect = 5e-13
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
 Frame = +1

Query: 235 VQNPNSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFL 408
           +++ ++ HWFR  LR+HDN ALR  +  A       R ++ +DP       VGIN+ RFL
Sbjct: 1   MRDKHTVHWFRKGLRLHDNPALREGLRGART----FRCVFIIDPWFAGSSNVGINKWRFL 56

Query: 409 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           LQ L+          + L+V+RG+  D LPKLF
Sbjct: 57  LQCLDDLDRNLRKLNSRLFVIRGQPADALPKLF 89


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 46.8 bits (106), Expect = 6e-07
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
 Frame = +1

Query: 247 NSYHWFRLDLRIHDNLALRNAI-NEAENRKH---LLRPIYFLDPNIKDK--VGINRLRFL 408
           N+  WFR  LR+HDN +L  A+ ++  N+      L PI+  D        VG NR++FL
Sbjct: 4   NNILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFL 63

Query: 409 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           L+SL             L V RG +V +L +LF
Sbjct: 64  LESLADLDRQFRDLGGQLLVFRGDSVTVLRRLF 96


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,712
Number of Sequences: 2352
Number of extensions: 10983
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)