Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0594
(637 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like cryptoc... 72 1e-12
D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein. 72 1e-12
D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein. 72 1e-12
BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1 (photoly... 72 1e-12
EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like cryptoc... 71 5e-12
BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2 (photoly... 71 5e-12
AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein. 71 5e-12
>EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like
cryptochrome 1 protein.
Length = 586
Score = 72.1 bits (169), Expect = 1e-12
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSL 420
N+ HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ L
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCL 59
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLF 88
>D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein.
Length = 586
Score = 72.1 bits (169), Expect = 1e-12
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSL 420
N+ HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ L
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCL 59
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLF 88
>D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein.
Length = 586
Score = 72.1 bits (169), Expect = 1e-12
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSL 420
N+ HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ L
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCL 59
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLF 88
>BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1
(photolyase-like) protein.
Length = 586
Score = 72.1 bits (169), Expect = 1e-12
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSL 420
N+ HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ L
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCL 59
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLF 88
>EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like
cryptochrome 2 protein.
Length = 593
Score = 70.5 bits (165), Expect = 5e-12
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSL 420
+S HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSL
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSL 78
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 79 EDLDTSLRKLNSRLFVVRGQPADVFPRLF 107
>BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2
(photolyase-like) protein.
Length = 593
Score = 70.5 bits (165), Expect = 5e-12
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSL 420
+S HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSL
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSL 78
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 79 EDLDTSLRKLNSRLFVVRGQPADVFPRLF 107
>AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein.
Length = 589
Score = 70.5 bits (165), Expect = 5e-12
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSL 420
+S HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSL
Sbjct: 19 SSVHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSL 74
Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
E + L+V+RG+ D+ P+LF
Sbjct: 75 EDLDTSLRKLNSRLFVVRGQPADVFPRLF 103
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,665,135
Number of Sequences: 237096
Number of extensions: 1469368
Number of successful extensions: 1898
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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