Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0594
         (637 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D83701-1|BAA12067.1|  540|Drosophila melanogaster photolyase pro...    73   3e-13
AE014134-3257|AAF53904.1|  540|Drosophila melanogaster CG2488-PB...    73   3e-13
AE014134-3256|AAN11080.1|  540|Drosophila melanogaster CG2488-PA...    73   3e-13
AY089584-1|AAL90322.1|  540|Drosophila melanogaster RE11660p pro...    73   4e-13
AY051514-1|AAK92938.1|  542|Drosophila melanogaster GH16672p pro...    43   4e-04
AF099734-1|AAC83828.1|  542|Drosophila melanogaster cryptochrome...    43   4e-04
AE014297-2641|AAF55649.1|  542|Drosophila melanogaster CG3772-PA...    43   4e-04
AB019389-1|BAA35000.1|  542|Drosophila melanogaster blue light p...    43   4e-04
AB018400-1|BAA33787.1|  542|Drosophila melanogaster blue-light r...    43   4e-04

>D83701-1|BAA12067.1|  540|Drosophila melanogaster photolyase
           protein.
          Length = 540

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
 Frame = +1

Query: 238 QNPNSYHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLRF 405
           Q     HWFR  LR+HDN AL +    A     K+ +RPI+ LDP I D  +VG NR RF
Sbjct: 4   QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRF 63

Query: 406 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           L Q+LE          + L+V+RGK  ++ P++F
Sbjct: 64  LQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIF 97



 Score = 31.5 bits (68), Expect = 0.99
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 513 WQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGV 608
           W+V+ LT + DI+P  V +D  ++ +A+ +GV
Sbjct: 100 WRVEMLTFETDIEPYSVTRDAAVQKLAKAEGV 131


>AE014134-3257|AAF53904.1|  540|Drosophila melanogaster CG2488-PB,
           isoform B protein.
          Length = 540

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
 Frame = +1

Query: 238 QNPNSYHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLRF 405
           Q     HWFR  LR+HDN AL +    A     K+ +RPI+ LDP I D  +VG NR RF
Sbjct: 4   QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRF 63

Query: 406 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           L Q+LE          + L+V+RGK  ++ P++F
Sbjct: 64  LQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIF 97



 Score = 31.5 bits (68), Expect = 0.99
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 513 WQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGV 608
           W+V+ LT + DI+P  V +D  ++ +A+ +GV
Sbjct: 100 WRVEMLTFETDIEPYSVTRDAAVQKLAKAEGV 131


>AE014134-3256|AAN11080.1|  540|Drosophila melanogaster CG2488-PA,
           isoform A protein.
          Length = 540

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
 Frame = +1

Query: 238 QNPNSYHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLRF 405
           Q     HWFR  LR+HDN AL +    A     K+ +RPI+ LDP I D  +VG NR RF
Sbjct: 4   QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRF 63

Query: 406 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           L Q+LE          + L+V+RGK  ++ P++F
Sbjct: 64  LQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIF 97



 Score = 31.5 bits (68), Expect = 0.99
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 513 WQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGV 608
           W+V+ LT + DI+P  V +D  ++ +A+ +GV
Sbjct: 100 WRVEMLTFETDIEPYSVTRDAAVQKLAKAEGV 131


>AY089584-1|AAL90322.1|  540|Drosophila melanogaster RE11660p
           protein.
          Length = 540

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
 Frame = +1

Query: 238 QNPNSYHWFRLDLRIHDNLALRN---AINEAENRKHLLRPIYFLDPNIKD--KVGINRLR 402
           Q     HWFR  LR+HDN AL +   A N A  R + +RPI+ LDP I D  +VG NR R
Sbjct: 4   QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR-YFVRPIFILDPGILDWMQVGANRWR 62

Query: 403 FLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           FL Q+LE          + L+V+RGK  ++ P++F
Sbjct: 63  FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIF 97



 Score = 31.5 bits (68), Expect = 0.99
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 513 WQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGV 608
           W+V+ LT + DI+P  V +D  ++ +A+ +GV
Sbjct: 100 WRVEMLTFETDIEPYSVTRDAAVQKLAKAEGV 131


>AY051514-1|AAK92938.1|  542|Drosophila melanogaster GH16672p
           protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 423
           WFR  LR+HDN AL  A+ + +    L+ P++  D        VG NR+RFLL SL+
Sbjct: 10  WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQ 65


>AF099734-1|AAC83828.1|  542|Drosophila melanogaster cryptochrome
           protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 423
           WFR  LR+HDN AL  A+ + +    L+ P++  D        VG NR+RFLL SL+
Sbjct: 10  WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQ 65


>AE014297-2641|AAF55649.1|  542|Drosophila melanogaster CG3772-PA
           protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 423
           WFR  LR+HDN AL  A+ + +    L+ P++  D        VG NR+RFLL SL+
Sbjct: 10  WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQ 65


>AB019389-1|BAA35000.1|  542|Drosophila melanogaster blue light
           photoreceptor protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 423
           WFR  LR+HDN AL  A+ + +    L+ P++  D        VG NR+RFLL SL+
Sbjct: 10  WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQ 65


>AB018400-1|BAA33787.1|  542|Drosophila melanogaster blue-light
           receptor protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 423
           WFR  LR+HDN AL  A+ + +    L+ P++  D        VG NR+RFLL SL+
Sbjct: 10  WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQ 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,715,800
Number of Sequences: 53049
Number of extensions: 454552
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)