Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0594
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     65   6e-13
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 64.9 bits (151), Expect = 6e-13
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
 Frame = +1

Query: 247 NSYHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSL 420
           ++ HWFR  LR+HDN +LR  +  A       R ++ LDP       +GIN+ RFLLQ L
Sbjct: 22  HTVHWFRKGLRLHDNPSLREGLAGAST----FRCVFVLDPWFAGSTNIGINKWRFLLQCL 77

Query: 421 EXXXXXXXXXXTCLYVLRGKAVDLLPKLF 507
           E          + L+V+RG+  D LPKLF
Sbjct: 78  EDLDCSLRKLNSRLFVIRGQPADALPKLF 106


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -1

Query: 301 EGQGYHEYVNLSETND-NCWGFGHFTLLKSEVLLILQKQMKGSC--FVGNYFRSCCVVCT 131
           EG  Y+   NLS+ +D   W      +  S  L +      GS   F  N ++   +VCT
Sbjct: 261 EGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCT 320

Query: 130 INN 122
           +N+
Sbjct: 321 VNS 323


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -1

Query: 301 EGQGYHEYVNLSETND-NCWGFGHFTLLKSEVLLILQKQMKGSC--FVGNYFRSCCVVCT 131
           EG  Y+   NLS+ +D   W      +  S  L +      GS   F  N ++   +VCT
Sbjct: 314 EGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCT 373

Query: 130 INN 122
           +N+
Sbjct: 374 VNS 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,542
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)