Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0592
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    33   0.030
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.5  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    26   4.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.1  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
 Frame = +3

Query: 222 PLSRGG----PVPNSPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGV 374
           P+S GG    P+P  P+ S ++ H   +    +    +L N I+L      ++PLSP   
Sbjct: 160 PVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRS 219

Query: 375 IAKRPAPIALPNSCA 419
            A+ P+PI L +S A
Sbjct: 220 PARTPSPIRLYSSDA 234


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 676 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 578
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 353 PPFASWRNSEEARTDRPSQQLRSLN 427
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 605 FFNSGLLFQTGTTLNPISVYSFDL*GILPISAFG 504
           F NSG  F  G+ L   S Y++ L GI    AFG
Sbjct: 24  FHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFG 57


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 613 SPRSLIVDSCSKLEQHSTLSRSILLI 536
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,111
Number of Sequences: 5004
Number of extensions: 66012
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)