Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0591
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    33   0.028
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   4.2  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   4.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   5.6  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   9.7  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   9.7  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 37  TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALR-RARPTRYGLMIPN 198
           ++NP  R +SR+       PP+SAP++  S +   P  A + R R  R+G+   N
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 234 CIGKTLQAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVS 374
           C G  + A  F    LRQ+     +   R P   SC H    PF V+
Sbjct: 49  CKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVN 95


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 660 STHLSSW-VPSRSFPQDSWRRI*NFKTVSSGKAND*RHW 547
           S H+S W +P  S P D+  ++ N+    +GK     HW
Sbjct: 318 SQHVSEWGIPLESAP-DALEKLINYTVDDAGKIGAYTHW 355


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 599  YKILKQSHPVKRMIRGIGAETTSTYSQ 519
            YK L Q + VK ++  + +ET S+Y++
Sbjct: 1086 YKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 89  YYHQDLHRRRLQAGSRPDPSALSVAHVLL 175
           Y  +DL RR+LQ  S+P  S  + A V++
Sbjct: 191 YKSEDLKRRKLQPSSKPLSSLEARAKVIM 219


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 315 IR*GVCNDSPAEATSPENGWP 253
           ++  +  +SP EAT PE  WP
Sbjct: 2   VKTNISKNSPKEATVPELDWP 22


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 409 WFIPQRQFCLPKLAHLAPSSDLRLHRSSKPEFSPFK 516
           W   +    + +L+ LA  S+ R HR + P++ PFK
Sbjct: 134 WLSERFGLQMDQLSRLAGHSEPRTHRGTHPDY-PFK 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,116
Number of Sequences: 5004
Number of extensions: 60448
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)