Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0591
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    32   0.39 
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    29   2.8  
At2g25100.1 68415.m03003 ribonuclease HII family protein contain...    28   4.8  
At1g48960.1 68414.m05487 universal stress protein (USP) family p...    28   4.8  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   6.4  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   6.4  
At2g23340.1 68415.m02787 AP2 domain-containing transcription fac...    28   6.4  
At1g31250.1 68414.m03825 proline-rich family protein contains pr...    28   6.4  
At5g03170.1 68418.m00265 fasciclin-like arabinogalactan-protein ...    27   8.4  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 228  VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 136
            VTG+ D+  L+W  H A TSRT  +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +2

Query: 191 YQIKNLASHVPVTVVYRQNASGHPFSGLVASAGESLHTP*RIPTSMATVLLS*ATNAFHG 370
           +   NL   +P + VY  N     FSG     G     P  IP+S ATV    +T A   
Sbjct: 248 FSFNNLTGSIPDSPVYL-NQKSISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAA 306

Query: 371 VP 376
           +P
Sbjct: 307 IP 308


>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
           Pfam profile: PF01351 ribonuclease HII
          Length = 296

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 395 LNTTFGSSHSASSAYQNWPTWHRHQISGF--IVRVS--RSSHHLKFE 523
           +N  FGS +      + W   H+H + GF  +VR S    + HLK E
Sbjct: 188 INRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGE 234


>At1g48960.1 68414.m05487 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family; similar to hypothetical protein GI:7770340 from
           [Arabidopsis thaliana]
          Length = 219

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 64  SRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTR 177
           S+  +  L +P    PT+ P  L P P   L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 391 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 290
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 391 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 290
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g23340.1 68415.m02787 AP2 domain-containing transcription
           factor, putative 
          Length = 176

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 161 RRRAQKGLGVSPLGASVGADLGGSSKYSSEALED*RGEG 45
           R+ A+ G  V  LGA+V  + GG ++   E +E+ R  G
Sbjct: 109 RKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSG 147


>At1g31250.1 68414.m03825 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           similar to prolin rich protein GB:S44189 GI:433706 from
           [Zea mays]
          Length = 165

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 52  PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 195
           P  +  AS    L PP ++P+  P+G TP    +L    P+     IP
Sbjct: 109 PAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIP 156


>At5g03170.1 68418.m00265 fasciclin-like arabinogalactan-protein
           (FLA11)
          Length = 246

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 149 QKGLGVSPLGASVGADLGGSSKYSSEALED*RGEGFRVNSSCSRAAAA 6
           +KG  VS  G++ G D GG S  SS+A     G G R+ +  + AA++
Sbjct: 196 EKGGSVSK-GSASGGDDGGDSTDSSDAERTGFGFGIRITTVAAIAASS 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,818
Number of Sequences: 28952
Number of extensions: 356070
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)