Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    32   0.005

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 335 YYIDKVY-YHCYFLMCWSVIVMPLFRNDEI*SAFFNFILICNYYFYCLFLQF 183
           YY   ++  H  FL+C    V+PLF             L+C YYFYC F+ F
Sbjct: 117 YYAFIIFTVHLLFLLCIYYFVVPLF------------FLLCIYYFYCAFIIF 156



 Score = 27.9 bits (59), Expect = 0.079
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 311 HCYFLMCWSVIVMPLFRNDEI*SAFFNFILICNYYFYCLFLQFL-PYPPYSLFLVF 147
           H  FL+C     + L         F    L+C YYFY  F+  L  Y  Y  F++F
Sbjct: 69  HLLFLLCSGYFTVHLLFYCPF-IIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIF 123



 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 365 HFIYTPTKFNYYIDKVYYHCYFLM-CWSVIVMPL--FRNDEI*SAFFNFILICNYYFYCL 195
           H ++ P  + +Y   + +  + L  C  +I++ +  F    I       +L+C YYFY +
Sbjct: 205 HLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYM 264

Query: 194 FLQF 183
            L F
Sbjct: 265 HLLF 268



 Score = 24.2 bits (50), Expect = 0.97
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 224 LICNYYFYCLFLQFL 180
           L+C YYFYC  +  L
Sbjct: 282 LLCIYYFYCALIILL 296



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -3

Query: 317 YYHCYFLMCWSVIVMPLFRNDEI*SAFFN---FILICNYYFYCLFLQFLPYPPYSLFLVF 147
           +Y+ + L C + I+  +     +   +F     IL+C YYF   F+ F P   Y  F ++
Sbjct: 261 FYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIF-PTHFYCAFSLY 319



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 212 YYFYCLFLQF 183
           YYFYC+ + F
Sbjct: 57  YYFYCVSITF 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,602
Number of Sequences: 336
Number of extensions: 2395
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)