Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    31   0.20 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   5.6  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   9.7  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = -2

Query: 606 NFESLATLVNQSHN----PWLARDLKSAFETKNNFGLCCTNNYCLIYKRSNKQLSRLALL 439
           N  SLA  +NQ  N    P    D   A +   ++    + NY  I  +SN+  S  A  
Sbjct: 9   NIASLAGAINQYKNEKAEPTQVLDAAKANKNTRSYPYSVSRNYSFILNKSNRSKSTAASP 68

Query: 438 H*VTQRTVQNRDSASRD 388
             V   T  N D A+++
Sbjct: 69  PYVIPSTSSNADDANKE 85


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 630 KSHYAQ-DSNFESLATLVNQSHNPWLARDLKSAFETKN 520
           KSH++  DSN +S     ++   P ++ DLKS+   KN
Sbjct: 307 KSHFSSTDSNTDSFGLESDERSLPSVSNDLKSSETLKN 344


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 645 HLVLLKSHYAQDSNFESLATLVNQSHNPWLARDLKSAF 532
           HL+L  S Y Q S  + L TL++++   W +R   S +
Sbjct: 212 HLLLRLSTYQQISIIKRLITLIDKAIPSWKSRSSDSKY 249


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = -3

Query: 314 YHCYFLMCWSVIV 276
           +HC+FL+C++V++
Sbjct: 24  FHCFFLLCFTVML 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,841
Number of Sequences: 5004
Number of extensions: 35219
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)