Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842...    29   3.3  

>01_01_1069 -
           8420454-8420670,8421272-8421447,8421556-8421738,
           8421885-8421980,8422064-8422192,8422266-8422445,
           8422524-8422634,8422714-8422869,8422983-8423078,
           8423160-8423327,8423402-8423642,8423724-8423851,
           8424042-8424134,8424214-8424309,8424431-8424523,
           8424741-8424850,8424999-8425134,8425215-8425315,
           8426029-8426152,8426237-8426411,8426523-8426681,
           8427423-8427536,8427669-8427848,8428926-8429005
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 287 SVIVMPLFRNDE-I*SAFFNFILICNYYFYCLFLQFLPYPPYSLFLVFNHMQSNN 126
           +V  + L +ND  + SA    + + N   + +   F+P PP S FL F H Q NN
Sbjct: 817 AVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF-HPQDNN 870


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,268
Number of Sequences: 37544
Number of extensions: 195145
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)