Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)                 31   0.63 
SB_49855| Best HMM Match : FBA_2 (HMM E-Value=6.2)                     29   4.5  
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)                     28   5.9  
SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)            28   5.9  
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 28   5.9  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  

>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
          Length = 363

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -3

Query: 374 ASTHFIYTPTKFNYYIDKVY--YHCYF--LMCWSVIVMPLFRNDEI*SAFFNFILICNYY 207
           A   F  T   F Y + ++Y  Y C+   L+C+S  ++ L  + ++ S F  +++ C   
Sbjct: 111 AIERFFATMFPFRYLVSRMYPYYFCFAFQLLCFSSAIVALLISVDMFSIFVKYLIACTLP 170

Query: 206 FYCL 195
             CL
Sbjct: 171 VICL 174


>SB_49855| Best HMM Match : FBA_2 (HMM E-Value=6.2)
          Length = 167

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = -2

Query: 663 RRTLFFHLVLLKSHYAQDSNFESLATLVNQSHNPWLARDLKSAFETKNNFGLCCTNNYCL 484
           R  L  HLV     Y  DSNF   +  + +     +  D+K      N + L    NY  
Sbjct: 93  RAKLLAHLVYFGEQYRYDSNFNDKSYFMQRIELYDIKGDIKKEIIKNNYYNL---PNYQN 149

Query: 483 IYKRSNK 463
           +YK+S +
Sbjct: 150 LYKKSEE 156


>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 642

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 630 KSHYAQ-DSNFE-SLATLVNQSH---NPWLARDLKSAFETKNNFGLC 505
           KS YA+ +  FE S + L+N  H   NP L   L+  +  K +F LC
Sbjct: 479 KSLYAETEQEFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFALC 525


>SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)
          Length = 311

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 630 KSHYAQ-DSNFE-SLATLVNQSH---NPWLARDLKSAFETKNNFGLC 505
           KS YA+ +  FE S + L+N  H   NP L   L+  +  K +F LC
Sbjct: 142 KSLYAETEQEFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFALC 188


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 374 ASTHFIYTPTKFNYYIDKVY--YHCYF--LMCWSVIVMPLFRNDEI*SAFFNFILICNYY 207
           A   F  T   F Y + ++Y  Y C+   L+C S  ++ L  +  + + F  +++ C   
Sbjct: 109 AIERFFSTMFPFRYRVSRMYPYYFCFAFQLLCISSAIVALLISVNVFNIFVKYLIACTLP 168

Query: 206 FYCL 195
             CL
Sbjct: 169 VICL 172


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 630 KSHYAQ-DSNFE-SLATLVNQSH---NPWLARDLKSAFETKNNFGLC 505
           KS YA+ +  FE S + L+N  H   NP L   L+  +  K +F LC
Sbjct: 537 KSLYAETEQEFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFALC 583


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 630 KSHYAQ-DSNFE-SLATLVNQSH---NPWLARDLKSAFETKNNFGLC 505
           KS YA+ +  FE S + L+N  H   NP L   L+  +  K +F LC
Sbjct: 634 KSLYAETEQEFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFALC 680


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,290
Number of Sequences: 59808
Number of extensions: 265977
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)