Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid tran...    30   1.7  
U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid
           transporter protein 2 protein.
          Length = 483

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 305 YFLMCWSVIVMPLFRNDEI*SAFFNFILICNYYFYCLFL--QFLPYPPYSLFLVFNH 141
           +FLMC  ++++P F +D     +  F+++     Y LF+  ++ P    S+++ F H
Sbjct: 412 FFLMCLFLLILPFFHSDPWELIYGVFLVLSGIPIYVLFVYNKYRPGFIQSVWIGFTH 468


>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -3

Query: 356 YTPTKFNYYIDKVYYHCYFLMCWSVIVMPLFRNDEI*SAFFNFILICNY--YFYCLFLQF 183
           + P++F YY+   +Y  +  M  +++ + L R   + +A              +C+FL F
Sbjct: 103 HIPSQFLYYMTLAFYGSFGTMICAIVPISLSRVLALSNASLYSTCFGGRRSLIFCIFLDF 162

Query: 182 LPYPPYSLFLVFNH 141
           LP     L  V  H
Sbjct: 163 LPVCILYLICVVEH 176


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 624 HYAQDSNFESLATLVNQSHNPWLARDLKSAFETKN-NFGLCCTNN 493
           H+        LA + +Q  + +LA D ++AFETKN NF +  + N
Sbjct: 49  HHQNPVTSSFLAYVPDQYTSNFLAYDARTAFETKNGNFWIGLSRN 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,762
Number of Sequences: 27780
Number of extensions: 201760
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)