Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.85 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 633 LKSHYAQDSNFESLATLVNQS-----HNPWLARDLKSAFETKNNFGLCCTNNYCLIYKRS 469
           LK+ +  DS F++  ++  Q+     H  WL +D    +  K    L C  N+ LIY   
Sbjct: 115 LKNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNF-LIYPHD 173

Query: 468 NKQ 460
            ++
Sbjct: 174 TQE 176


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 185 FLPYPPYSLF 156
           F PYPPY  F
Sbjct: 226 FYPYPPYGTF 235


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 555 ARDLKSAFETKNNFGLCCTNNYCLIYKRSNKQL 457
           +R+ K      NN+     NNY   Y   NK+L
Sbjct: 76  SREPKIISSLSNNYNYSNYNNYNNNYNNYNKKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,758
Number of Sequences: 438
Number of extensions: 2933
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)