Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0590
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10...    30   1.2  
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ...    29   3.6  

>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 287 SVIVMPLFRNDE-I*SAFFNFILICNYYFYCLFLQFLPYPPYSLFLVFNHMQSNN 126
           SV  + L +ND  + SA    + + N   + +   F+P PP S FL F H Q NN
Sbjct: 833 SVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF-HPQDNN 886


>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
           WD-40 repeats (PF00400) (2 weak)
          Length = 1108

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 269 LFRNDE-I*SAFFNFILICNYYFYCLFLQFLPYPPYSLFLVFNHMQSNN 126
           L +ND  + SA    + + N   + +   F+P PP S FL F H Q NN
Sbjct: 828 LSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAF-HPQDNN 875


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,115
Number of Sequences: 28952
Number of extensions: 170458
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)