Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0589
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 fam...    27   4.1  
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    27   7.1  

>At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mus spretus] GI:6093318;
           contains Pfam profile PF03124: EXS family
          Length = 457

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 408 CECILGYMNVSRKVLHSKDLILF--YFYYTEILLI 310
           C C +G+ +V R  +  +DL L+  + YY  +LL+
Sbjct: 69  CCCKIGWDSVMRMSIDLRDLFLYEAFLYYNPLLLV 103


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 405 ECILGYMNVSRKVLHSKDLILFYFYYTEILLI 310
           E +   ++V + +LH+KDL+ F  + ++I L+
Sbjct: 60  EVVNALLSVKQSLLHAKDLLSFVSHVSKIYLV 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,724,987
Number of Sequences: 28952
Number of extensions: 70105
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)