Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0588
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   2.6  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.6  
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    25   6.1  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   6.1  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   8.0  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 500 SRLVMGVCRPSAGPNAEPPRCVL-PRPSPGMPFSDRNSSRSTYLRSGS*GRVLSH 339
           S+L   +  P A    E   C+  P  +   P SDR+   +   RS S  R LSH
Sbjct: 424 SKLAPSITFPDACDALEAEECITRPGSATNTPQSDRSLDINDLSRSSSYSRHLSH 478


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 399 VGERHAGRGPGQHAPGRLRVRAGAG-PADSHHQAGALS 509
           +G+R     PG   P  L VR+G   P+ SHH +   S
Sbjct: 52  LGQRRPSFLPGVSVPDTLSVRSGFSIPSSSHHPSAVPS 89


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271 TLEDKKDDNDLWEAQAAFLGPNLWDK-TLPYDPDLKYVDL 387
           +LE KK+D D W ++ A+LG  L  K    Y  D K+V L
Sbjct: 5   SLEVKKNDKDPW-SKTAYLGGRLVSKIPAVYSNDNKFVFL 43


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 232 TRLRQRQVVNTKETLEDKKDDNDLWEAQAAFLGPNLWDKT 351
           TRL + +     + L++ +D  D+ E +   +  ++WD T
Sbjct: 65  TRLSENENFRNPKLLDNLQDFLDIKEPRGTMISKDMWDPT 104


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 364 PDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPALGLQTPITK 495
           PDL   DL E+L   G+P     + H+ GSA   A    T + K
Sbjct: 367 PDLLATDLAEYLVRKGLPFR--QTHHISGSAVRMAEERNTTLDK 408


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 27/111 (24%), Positives = 47/111 (42%)
 Frame = +1

Query: 226 ETTRLRQRQVVNTKETLEDKKDDNDLWEAQAAFLGPNLWDKTLPYDPDLKYVDLDEFLSE 405
           + T ++QR V      L D K    + E   A L P    +T PY    + +  ++ + +
Sbjct: 590 KNTEVQQRSV-EFHLILNDSKLSKTILEPTPAPLPP---PRTTPYQNAEQKLKANKHVEK 645

Query: 406 NGMPGEGLGSTHLGGSAFGPALGLQTPITKRERSPRPPTA*APDTIKPAAF 558
                  L    +G +    A  L+TP+ +  +SP+   + AP T K + F
Sbjct: 646 RVQESNELLDL-IGLTTPSVAEPLETPVDEMTQSPQSSLSRAPSTSKKSHF 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,445
Number of Sequences: 5004
Number of extensions: 28998
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)