Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0588
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0975 + 8223269-8224354 32 0.29
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 32 0.38
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 32 0.38
05_05_0392 + 24629528-24630442 30 1.5
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 30 1.5
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 29 2.0
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 29 2.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 2.0
02_05_0218 + 26860319-26862448 29 2.7
06_03_0219 - 18227559-18227858,18227864-18228340 29 3.5
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 3.5
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 28 4.7
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 6.2
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713... 28 6.2
08_01_0443 + 3930381-3930908 28 6.2
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 28 6.2
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 28 6.2
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 28 6.2
01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589 28 6.2
08_01_0261 + 2131189-2131737 27 8.2
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 27 8.2
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 27 8.2
>07_01_0975 + 8223269-8224354
Length = 361
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 330 SQPVGQDPALRPRSQVRG-PR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGAL 506
S P+ P S G P P G G G A G A +GPA+ +GA
Sbjct: 249 SSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGPSSYGAASGPAEGPSSSGAA 308
Query: 507 SSPSDCMSP 533
S P++ SP
Sbjct: 309 SGPAEGPSP 317
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +3
Query: 315 GRLLGSQPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPAD 482
GR GS P G P PR + PR G+R RG + APG G PA+
Sbjct: 99 GRPFGSGPPGDRPRGPPRFEGDRPR---FGDRDGYRGGPRGAPGDFGGEKGGAPAE 151
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +3
Query: 315 GRLLGSQPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPAD 482
GR GS P G P PR + PR G+R RG + APG G PA+
Sbjct: 99 GRPFGSGPPGDRPRGPPRFEGDRPR---FGDRDGYRGGPRGAPGDFGGEKGGAPAE 151
>05_05_0392 + 24629528-24630442
Length = 304
Score = 29.9 bits (64), Expect = 1.5
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Frame = +3
Query: 306 GGAGRLLGSQPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRL-------RVRA 464
GG GR+ + VG + A +S+ V R PG+ A R R R
Sbjct: 93 GGGGRVRARRAVGAERATSEKSEAASESSVATTATGPERSPGKPARKRAVVSGELGRARR 152
Query: 465 GAGPADSHHQA----GALSSPS----DCMSPGHHQTRRF-SPA 566
GPA + H A G +SPS PG TRR SPA
Sbjct: 153 DRGPAAAVHGAGRPGGGRASPSPPPPPRREPGERPTRRSPSPA 195
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 270 DARRQEG*QRPLGGAGRLLGSQPVGQDPALRPRSQVRG 383
+A+R+ G QR G GR + PA+RP + RG
Sbjct: 17 EAKRKSGKQRGSGAKGRRRNGDRAFRPPAMRPEEEGRG 54
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +3
Query: 384 PR*VPVGE-RHAGRGPGQHAPGRLRVRA-----GAGPADSHHQAGALSSPSD 521
P+ PVG R + PG P R+R R G+G + SHH + S +D
Sbjct: 287 PKVGPVGRTRGSAEHPGSAEPARMRRRLSRLLKGSGSSSSHHDGSSTRSSAD 338
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +3
Query: 318 RLLGSQPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPAD 482
R GS P G P PR + PR G+R RG + APG G PA+
Sbjct: 100 RPFGSGPPGDRPRGPPRFEGDRPR---FGDRDGYRGGPRGAPGDFGGEKGGAPAE 151
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 536 SGAHAVGGRGERSRLVMGVCRPSAG-PNAEPPRCVLPRPSPGMPFSDRNSSRSTYLRSG 363
S A A G SR + V +A P P P PSP P + +S S+Y SG
Sbjct: 4 SYAAAASGSASSSRKPVPVAAAAARRPAPSPAAAAAPAPSPSNPSAVSDSDPSSYSSSG 62
>02_05_0218 + 26860319-26862448
Length = 709
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 554 AAGLMVSGAHAVGGRGERSRLVMGVCRPSAGPNAEPPRCVL 432
A+ L SGAH G G ++ L G+ P A +PP +L
Sbjct: 191 ASDLSSSGAHTATGGGGKASLGFGLFSPEATSLEQPPPSML 231
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +3
Query: 330 SQPVGQDPALRPRSQVRGPR*VPV--GERHAGRGPGQHAPGRLR--VRAGAGPADSHHQA 497
S P P PR +R PR P R R A RL RA +G A
Sbjct: 93 SPPPASPPPPPPRLALRFPRRPPELPPRRRPSRFSAPAASSRLSRLARAPSGRAVFSLGL 152
Query: 498 GALSSPSDCMSPGHHQTR 551
A SSPS +S G H+ R
Sbjct: 153 AATSSPSPSVSRGKHRRR 170
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 400 SENGMPGEGLGSTHLGGSAFGPAL---GLQTPITKR 498
+EN + GS+HLG GP L G TP+TK+
Sbjct: 243 AENTLSNRNNGSSHLGHMQAGPNLGSDGKNTPLTKK 278
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = -1
Query: 488 MGVCRPSAGPNAEPPRCVLPRPSPGMPFSDRNSSRSTYLRSGS*GRVLSHRLGPKK 321
+G C G A+PPR L F+D STY R GR L+ RLG K
Sbjct: 114 LGYCDVEVGTGAQPPRGQLINVHYTARFTDGIVFDSTYKR----GRPLTMRLGAGK 165
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 241 RQRQVVNTKETLEDKKDDNDLWEAQAAFLGPNLWDKTLP 357
R R+ VN +E+ E +DD Q+A L N+ D T+P
Sbjct: 560 RARKDVNEEESEETPEDDEKGHALQSASLVMNMLDATMP 598
>08_02_0660 -
19768165-19769394,19770500-19770752,19771307-19771372,
19771524-19771588,19773265-19773343,19773920-19774293
Length = 688
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 276 ERLLSVDDLPLTKTCCLQM*YWLQRSSSWTWP 181
+++ S+ P T+TC Q +L SWTWP
Sbjct: 12 DKVCSMAHAPDTRTCPSQEWTFLAWGRSWTWP 43
>08_01_0443 + 3930381-3930908
Length = 175
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 554 AAGLMVSGAHAVGGRGERSRLVMGVCRPSAGPNAEPPRCVLPR--PSPGMP 408
A +VS + GG G RSR C P+ P + RC L R SP P
Sbjct: 53 ATAAVVSSSRGGGGLGARSRRRECACSPTTHPGSF--RCALHRGAASPSRP 101
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 310 AQAAFLGPNLWDKTLPYDPDLKYVDLDE 393
A A G WD T Y+ D +YVDLD+
Sbjct: 554 ASGAGAGGFRWDVTTIYNVDRRYVDLDK 581
>05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 518 GGRGERSRLVMGVCRPSAGPNAEPPRCVLPRPSP----GMPFSD 399
GG GERS ++ SAG E VLP P P PFS+
Sbjct: 178 GGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSE 221
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 536 SGAHAVGGRGERSRLVMGVCRPSAGPNAEPPRCVLPRPSPGMP 408
+G +G G R+ R + P+ PP +LP P P P
Sbjct: 108 TGRAGLGLGGNRASAPAAAHREAVAPSFTPPPPILPAPQPVQP 150
>01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589
Length = 344
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/63 (33%), Positives = 23/63 (36%)
Frame = +3
Query: 294 QRPLGGAGRLLGSQPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAG 473
Q P+GG G S Q P LR S V G + A R H P R G
Sbjct: 271 QYPVGGTGGAEPSNTQTQSPDLRSFSNVVGDYSYTAAQSSANRLDQMHHPVGGRGSTGGA 330
Query: 474 PAD 482
AD
Sbjct: 331 AAD 333
>08_01_0261 + 2131189-2131737
Length = 182
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 472 GLQTPITKRERSPRPPTA*APDTIKPAAFHQPIS 573
G T ++ PR PTA AP+ + P A +P+S
Sbjct: 120 GSGTALSPMAPRPRTPTAMAPNAMPPMAGGRPVS 153
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 322 FLGPNLWDKTLPYDPDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPALGL 477
FL N W++ P DP K+ + +F+ N E +G + + LG+
Sbjct: 80 FLNSN-WEEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGM 130
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 479 CRPSAGPNAEP--PRCVLPRPSPGMP 408
C P++ P+ P P C+L +P+ MP
Sbjct: 74 CMPASSPSFSPASPSCILAQPNQAMP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.137 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,879
Number of Sequences: 37544
Number of extensions: 291560
Number of successful extensions: 1408
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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