Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0588
         (578 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   2.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   3.1  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   9.5  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   9.5  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 FLSENGMPGEGLGSTH 441
           F ++NG P +G G+TH
Sbjct: 60  FSAQNGWPTDGFGTTH 75



 Score = 23.8 bits (49), Expect = 4.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 418 GEGLGSTHLGGSAFGPALGLQTPITKRERSPRPPTA*APDTIKPAAFHQPIST 576
           G  LGS H GGSA G    L         SP       P +I  ++ HQ  +T
Sbjct: 299 GSSLGSAHHGGSA-GTLGSLVGKYDLSALSPPGSLGGVPGSIVSSSAHQQHTT 350


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 470 SAGPNAEPPR-CVLPRPSPGMPFSDRNSSRSTYLRSGS*GRVLSHRL 333
           S  P   PPR   +P P PG+   ++++       +GS G+   H L
Sbjct: 374 SPNPARAPPRNFTMPGPGPGIGEREKSNPSRPPSVAGSYGKPNDHEL 420



 Score = 22.6 bits (46), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 339 VGQDPALRPRSQVRGPR 389
           +GQ P +RP + + GPR
Sbjct: 260 MGQPPPIRPPNPMGGPR 276


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 461 PNAEPPRCVLPRPSPGMP 408
           PNA+PP    P P  G P
Sbjct: 577 PNAQPPPAPPPPPPMGPP 594


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 462 AGAGPADSHHQAGALSSPSDCMSPGHH 542
           AG G   S    G L+S S     GHH
Sbjct: 682 AGGGAGSSGGSGGGLASGSPYGGGGHH 708


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 463,453
Number of Sequences: 2352
Number of extensions: 8754
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)