Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0588
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.11
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 31 0.45
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 31 0.59
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 30 1.4
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 28 5.5
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 27 7.3
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 27 9.6
U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 27 9.6
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +3
Query: 396 PVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGALSSPSDCMSPGHHQTRRFSPADFH 575
P G H GR H PGR GP HH G S HH R F P H
Sbjct: 376 PRGHGHGGRHGPPHCPGR---HGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGH 432
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 31.5 bits (68), Expect = 0.45
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +3
Query: 342 GQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGALSSPSD 521
G P + + GP P +GP APG+ V G GPA AG +P
Sbjct: 124 GNGPCITCPAGAPGPAGAPGAP--GPQGPSG-APGQDAVGGGPGPAGPQGPAGDAGAPGQ 180
Query: 522 CMSPGH 539
+PGH
Sbjct: 181 AGAPGH 186
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 31.1 bits (67), Expect = 0.59
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +3
Query: 342 GQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGALSSPSD 521
G P + + GP P +GP APG+ V G GPA AG +P
Sbjct: 124 GNGPCITCPAGAPGPAGAPGAP--GPQGPSG-APGQDAVGEGPGPAGPQGPAGDAGAPGQ 180
Query: 522 CMSPGH 539
+PGH
Sbjct: 181 AGAPGH 186
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 432 QHAPGRLRVRAGAGPADSHHQAGALSSPSDCMSPGHHQTRR 554
+H R A P+ SHHQ LSSP+ S +Q R+
Sbjct: 860 EHKEYRPSPNAAPTPSPSHHQKPKLSSPAMVSSTNEYQLRK 900
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +1
Query: 361 DPDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPAL---GLQTPITKRERSPRPPTA*A 531
+ D + +L +ENG G L + L G+ T T RE SP PP
Sbjct: 26 EEDARVQNLLRSTNENGTTQNGTSRQTLSSNEVEDILRQVGISTEPTVREESPAPPPGSH 85
Query: 532 PDT-IKPAAFHQPIS 573
D + P+A H IS
Sbjct: 86 SDNHVDPSASHPRIS 100
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 333 QPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGALSS 512
+P Q PA P + GP+ AG+G G APG + G + QAGA
Sbjct: 151 KPCPQGPAGAPGAP--GPQGDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQ 208
Query: 513 P-SDCMS 530
P SD S
Sbjct: 209 PGSDAQS 215
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 333 QPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGALSS 512
+P Q PA P + GP+ AG+G G APG + G + QAGA
Sbjct: 151 KPCPQGPAGAPGAP--GPQGDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQ 208
Query: 513 P-SDCMS 530
P SD S
Sbjct: 209 PGSDAQS 215
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 333 QPVGQDPALRPRSQVRGPR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADSHHQAGALSS 512
+P Q PA P + GP+ AG+G G APG + G + QAGA
Sbjct: 151 KPCPQGPAGAPGAP--GPQGDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQ 208
Query: 513 P-SDCMS 530
P SD S
Sbjct: 209 PGSDAQS 215
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 397 LSENGMPGEGLGSTHLGGSAFGPA-LGLQTPITKRERSPRPPTA 525
+SE G G GS + + GP + Q P T PRPP A
Sbjct: 152 ISEESGSGSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPPA 195
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 205 LEPVSHLETTRLRQRQVVNTKETLEDKKDDNDLWEAQAAFLGPNLWDK-TLPYDPDLKYV 381
+E + L R +++ E L ++++D D W++Q PN D + +D +++ +
Sbjct: 914 VELLEELNEYRPSLLEILEETERLHEEEEDEDEWKSQFMTNDPNPGDTYNIDWDAEMRDL 973
Query: 382 DLD 390
LD
Sbjct: 974 LLD 976
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 397 LSENGMPGEGLGSTHLGGSAFGPALGLQTPITKRERSPRPPTA*APDTIKPAAFHQPIST 576
+ ++GM G+G T + S G +G Q +++ + P+ + P A P ST
Sbjct: 3309 MGQSGMGQSGMGQTGMSRSGLGGGIGQQGQQSQQPQQPQVSQQQNQRGMNPGAQLPPYST 3368
>U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical
protein F22H10.2 protein.
Length = 102
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 423 GPGQHAPGRLRVRAGAGPADS---HHQAGALSSPSDCMSPGHH 542
GPG +AP + V G HH G L ++ GHH
Sbjct: 40 GPGGYAPPTVHVHNNGGHHHGHHHHHHHGLLHGLGHALTGGHH 82
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 RRQEG*QRPLGGAGRLLGSQPVGQDPALRPRSQVR--GPR*VPVGERHAGRGPGQHAPG 446
R + G R GGAGR + V + RP+ + R GPR GER A R G+ G
Sbjct: 70 RGRGGRGRGRGGAGRPRDGERVSNENGDRPQGENRRGGPR--RGGERGAARPAGRGGRG 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,959
Number of Sequences: 27780
Number of extensions: 194391
Number of successful extensions: 860
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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