Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0588
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.10 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   3.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +3

Query: 384 PR*VPVGERHAGRGPGQHAPGRLRVRAGAGPADS--HHQAGALSSPSDCMSPGH 539
           P  VPVG   AG   G   PG      GA  +D    +    + SPS  + P H
Sbjct: 54  PPSVPVGSAVAGTAGGALFPGMAAAGKGAARSDDWLANANSPVGSPSAALQPQH 107


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 542 MVSGAHAVGGRGERSRLVMGVCRPSAGPNAEPPRCVLPRPSPGMPFSD-RNSSRSTYLRS 366
           +V G + +G     +      C P  GPN   P      PS  +  +D R +  + ++ +
Sbjct: 24  LVVGPYVIGLMNTMTHTTNAFCLPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVA 83

Query: 365 GS*G 354
           G+ G
Sbjct: 84  GAVG 87


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 506 ERSRLVMGVCRPSAG 462
           ER++ VMG C P++G
Sbjct: 105 ERAQSVMGKCLPTSG 119


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 506 ERSRLVMGVCRPSAG 462
           ER++ VMG C P++G
Sbjct: 105 ERAQSVMGKCLPTSG 119


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -1

Query: 542 MVSGAHAVGGRGERSRLVMGVCRPSAGPNAEPP 444
           +V G + +G     +      C P  GPN   P
Sbjct: 23  LVVGPYVIGLMNTMTHTTNAFCLPFCGPNVINP 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 386 RSTYLRSGS*GRVLSHRLGPKKAACASQ 303
           RST+L+     RV S R   ++ +C SQ
Sbjct: 386 RSTHLKVSGINRVGSTRRPSRRNSCESQ 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,962
Number of Sequences: 438
Number of extensions: 2361
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)