Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0586
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    28   4.2  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    28   4.2  
At3g48200.1 68416.m05259 expressed protein                             27   9.6  

>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 259 YNYL*VKFHGISGTGSNSVNE*KASEYTNFRIYIV 155
           YN   +K  G+ G GSN+VN    SE +    +IV
Sbjct: 116 YNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIV 150


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 259 YNYL*VKFHGISGTGSNSVNE*KASEYTNFRIYIV 155
           YN   +K  G+ G GSN+VN    SE +    +IV
Sbjct: 116 YNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIV 150


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 64  SFIN*TEFNRIRVMTETTAQPSLALPLT---YNILYKCESL 177
           SFI+ T  N I + T T A+    LPLT   Y + ++  +L
Sbjct: 560 SFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNL 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,988
Number of Sequences: 28952
Number of extensions: 268504
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)