Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0582
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 155 3e-39
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 88 8e-19
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 84 9e-18
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 82 5e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 6e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 47 2e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.023
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.093
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.12
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.0
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.7
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 2.7
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 3.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 4.6
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 6.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 155 bits (377), Expect = 3e-39
Identities = 68/75 (90%), Positives = 70/75 (93%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 435 HIMFETFNTPAMYVA 479
I+FETFN PA YVA
Sbjct: 121 QIIFETFNAPAFYVA 135
Score = 126 bits (303), Expect = 2e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 79 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQRK 258
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG+MVGMGQKDSYVGDEAQ K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 87.8 bits (208), Expect = 8e-19
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = +3
Query: 270 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFE 449
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 450 TFNTPAMYVA 479
+FN +Y+A
Sbjct: 149 SFNCAGLYIA 158
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVG--MGQKDSYVGDE 246
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 84.2 bits (199), Expect = 9e-18
Identities = 33/74 (44%), Positives = 53/74 (71%)
Frame = +3
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTH 437
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 438 IMFETFNTPAMYVA 479
MFE + +YVA
Sbjct: 122 TMFERYGFGGVYVA 135
Score = 53.2 bits (122), Expect = 2e-08
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 85 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGVMVGMGQKDSYVGDEAQ 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + KD VGDEA+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAE 59
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 81.8 bits (193), Expect = 5e-17
Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +3
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 434
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 435 HIMFETFNTPAM 470
+ET N PA+
Sbjct: 126 EYFYETLNVPAL 137
Score = 68.5 bits (160), Expect = 5e-13
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 61.7 bits (143), Expect = 6e-11
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = +3
Query: 267 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMF 446
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 447 ETFNTPAMYVA 479
E+ PA Y+A
Sbjct: 123 ESLRCPATYLA 133
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 183
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 57.2 bits (132), Expect = 1e-09
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNT 461
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT ++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 462 PAM 470
P++
Sbjct: 145 PSV 147
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 192
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +3
Query: 291 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNTPAM 470
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 471 YV 476
Y+
Sbjct: 134 YL 135
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 252
EE+ +LV+D GS + G+AG+++P + PS ++GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 33.1 bits (72), Expect = 0.023
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTHIMFE 449
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 450 TFNTPAMYVAH 482
P +A+
Sbjct: 172 ECQVPGFTIAY 182
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.093
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 342 FYNELRVAPEEHPVLLTE--APLNPKANREKMTHIMFETFNTP 464
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.12
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -1
Query: 263 TSFLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 99
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 98 NAATSSS 78
N TS+S
Sbjct: 449 NCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 242 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 126
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 2.0
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -3
Query: 273 GSGYLFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 100
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDE 246
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 295 PCSMGYLRVRIPLFSVPHLLHKSPSVPYRP 206
P + Y PL +VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = -1
Query: 314 IPVSDDSVFDGVFEGQDTSFLCASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 135
+P + +V +TSF ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 134 PALHIP 117
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 124 TYRSHCLLPTRQLLRRTS*ISEI 56
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 256 FSVPHLLHKSPSVPYRPSRHDGGAFPRSRGTR 161
+ + L+ K+PS PY SR A S TR
Sbjct: 304 YDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 384 LLTEAPLNPKANREKMTHIMFETFN 458
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 240 SYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHTG 115
+Y +LL D + M G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAG 144
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,963
Number of Sequences: 5004
Number of extensions: 48569
Number of successful extensions: 143
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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