Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0582
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 2e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 2e-41
SB_56| Best HMM Match : Actin (HMM E-Value=0) 165 2e-41
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 165 2e-41
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 2e-41
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 9e-17
SB_54| Best HMM Match : Actin (HMM E-Value=0) 77 8e-15
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 61 6e-10
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 60 1e-09
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 58 5e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 3e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.39
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.67
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 0.89
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 0.89
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 0.89
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 30 1.2
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.2
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 2.7
SB_8232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 28 3.6
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 27 8.3
SB_35235| Best HMM Match : zf-CCCH (HMM E-Value=8) 27 8.3
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 8.3
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 8.3
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 27 8.3
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 27 8.3
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 27 8.3
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 8.3
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 165 bits (400), Expect = 2e-41
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 435 HIMFETFNTPAMYVA 479
IMFETFN+PAMYVA
Sbjct: 122 QIMFETFNSPAMYVA 136
Score = 124 bits (299), Expect = 4e-29
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = +1
Query: 73 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 252
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 253 RK 258
K
Sbjct: 61 SK 62
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 165 bits (400), Expect = 2e-41
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 435 HIMFETFNTPAMYVA 479
IMFETFN+PAMYVA
Sbjct: 121 QIMFETFNSPAMYVA 135
Score = 121 bits (292), Expect = 3e-28
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +1
Query: 79 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQRK 258
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 165 bits (400), Expect = 2e-41
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 435 HIMFETFNTPAMYVA 479
IMFETFN+PAMYVA
Sbjct: 121 QIMFETFNSPAMYVA 135
Score = 122 bits (295), Expect = 1e-28
Identities = 56/60 (93%), Positives = 58/60 (96%)
Frame = +1
Query: 79 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQRK 258
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 165 bits (400), Expect = 2e-41
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 435 HIMFETFNTPAMYVA 479
IMFETFN+PAMYVA
Sbjct: 122 QIMFETFNSPAMYVA 136
Score = 128 bits (310), Expect = 2e-30
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = +1
Query: 73 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 252
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 253 RK 258
K
Sbjct: 61 SK 62
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 165 bits (400), Expect = 2e-41
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 435 HIMFETFNTPAMYVA 479
IMFETFN+PAMYVA
Sbjct: 122 QIMFETFNSPAMYVA 136
Score = 124 bits (299), Expect = 4e-29
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = +1
Query: 73 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 252
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 253 RK 258
K
Sbjct: 61 SK 62
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 122 bits (295), Expect = 1e-28
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +1
Query: 79 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQRK 258
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTF 344
KRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 34.7 bits (76), Expect = 0.041
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3
Query: 417 NREKMTHIMFETFNTPAMYVA 479
N + M IMFETFN+PAMYVA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVA 98
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 83.4 bits (197), Expect = 9e-17
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +3
Query: 249 TEKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 425
++ R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NRE
Sbjct: 62 SQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNRE 121
Query: 426 KMTHIMFETFNTPAMYVA 479
KM +MFE + +Y+A
Sbjct: 122 KMIEVMFENYQFEGVYIA 139
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +1
Query: 91 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGVMVGMGQKDSYVGDEAQR 255
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA +
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQ 63
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 77.0 bits (181), Expect = 8e-15
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = +3
Query: 324 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNTPAMYVA 479
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M +MFE+FN P MYVA
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVA 2180
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 195
+V+DNGSG CKAG + D++PR VFP+IVGRPRH
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH 2129
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 60.9 bits (141), Expect = 6e-10
Identities = 25/69 (36%), Positives = 42/69 (60%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNT 461
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T +MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 462 PAMYVAHPS 488
PA ++ S
Sbjct: 63 PAFFLCKNS 71
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +3
Query: 372 EHPVLLTEAPLNPKANREKMTHIMFETFNTPAMYVA 479
+HPVLLTEAPLNP+ NREK + FETFN PA++++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFIS 161
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 57.6 bits (133), Expect = 5e-09
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 195
E LV+D GS M K GFAGDDAP+ VFP IVGRPRH
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRH 1391
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 67 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVG 213
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 276 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 389
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 195 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 79
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 273 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 425
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 170 GNTARGASSPAKPALHIPEPLSTT 99
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 170 GNTARGASSPAKPALHIPEPLSTT 99
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.7 bits (66), Expect = 0.67
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.89
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 170 GNTARGASSPAKPALHIPEPLSTT 99
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 30.3 bits (65), Expect = 0.89
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 256 FSVPHLLHKSPSVPYRPSRHDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLLRR 77
+ P L +P + RPS + + S + LL RP TYR+ LP+ LL +
Sbjct: 128 YRAPLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNE 353
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 85 EVAALVVDNGSGMCKAGFAGDDAPRAV 165
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = -3
Query: 261 LFSLCLISYI--RVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQ 97
+F+ CL + V+LSH + H + A +HG R+ SCET L H A + +
Sbjct: 461 IFATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNK 519
Query: 96 RGNFFVAHLELVK 58
G V L+ K
Sbjct: 520 HGQVDVLLLDFQK 532
>SB_8232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 28.7 bits (61), Expect = 2.7
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Frame = +3
Query: 39 HTYILLISLIQDVRRRSCRVGSRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSW------ 200
HTY+ Q+ RRR ++GSRQ L +Q PL + PP W
Sbjct: 39 HTYVSA----QERRRRRYQLGSRQDLNIIQKIKISNSCSPGD-PLVLERPPPRWSSNSPY 93
Query: 201 RDGRYGTEGLLCRR*GTEKRGILTLKYPIEHGIVTNWDDMEK 326
+ Y + ++ +R E G+ L H +W + E+
Sbjct: 94 SESYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEE 135
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 170 GNTARGASSPAKPALHIPEPLSTT 99
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 170 GNTARGASSPAKPALHIPEPLSTT 99
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 438 IMFETFNTPAMYVA 479
IMFE FN+PA+YVA
Sbjct: 1 IMFEAFNSPAVYVA 14
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -2
Query: 313 SQLVTIPCSMGYLRVRIPLFSVPHLLHKS---------PSVPYRPSRHDGGAFP 179
S+ ++IP G+ R L P L H S P+ PY PS+ G +FP
Sbjct: 3759 SKPISIPSRDGHARAATSLPGSPQLSHLSGRFSSDDVSPTPPYSPSQKQGFSFP 3812
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 185 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 75
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_35235| Best HMM Match : zf-CCCH (HMM E-Value=8)
Length = 119
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 151 APRAVFPS-IVGRPRHHGVMVGMGQ 222
+PR + PS I+G P HHG++ GQ
Sbjct: 42 SPRGMPPSGILGLPSHHGMIPSYGQ 66
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 91 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 195
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L LC + ++LSH + H + +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKHLSRFNILSN-AQHGFRQGLSCETQLVLT 900
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 261 LFSLCLISYIRVLLSHTDHHAMMAGPSHDRGEHGARSIISCETGLAHT 118
L +C ++LSH + H + A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,953
Number of Sequences: 59808
Number of extensions: 435989
Number of successful extensions: 1126
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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