Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0582
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   4.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.3  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 354  LRVAPEEHPVLLTEAPLNPKANREKMTHI 440
            LR+ P  H V+ T   +NP  + EK+ HI
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL-HI 1488


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 174 DRGKAPPSWRDGRYGTEGLLCRR*GTEKRGILTLKYPIEHGI 299
           D  K PPS+R  R        R  G   RG    K  + H I
Sbjct: 403 DPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAI 444


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 261 LFSLCLISYIRV 226
           LF+LC++SY+ V
Sbjct: 8   LFTLCIVSYMMV 19


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 118 GMCKAGFAGD 147
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 487 LGWATYMAGVLNVSNMMWVIFSLLALGLRGAS 392
           +G    M   LN+SN+ W+        L GA+
Sbjct: 22  IGLHNNMCTSLNLSNLFWLFVGTYFPSLIGAN 53


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 177 DRGEHGARSIISCETGLA 124
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 485 WMGDVHGGRVE 453
           WMG +HG  VE
Sbjct: 491 WMGVLHGDEVE 501


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 177 DRGEHGARSIISCETGLA 124
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  SSWHTYILLISLIQDVRRRSCRVGS 104
           +S+H   L  SL++    ++C  GS
Sbjct: 75  TSYHRINLKCSLVEFSENKNCNAGS 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,625
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)