Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0580
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 104 7e-24
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 99 2e-22
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 63 2e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 50 1e-07
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 0.78
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 27 1.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.1
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 4.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 4.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.5
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 9.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 104 bits (249), Expect = 7e-24
Identities = 44/64 (68%), Positives = 52/64 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F K+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 403 TIGK 414
T+GK
Sbjct: 109 TVGK 112
Score = 91.9 bits (218), Expect = 4e-20
Identities = 40/63 (63%), Positives = 44/63 (69%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE I +HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 260 TYP 268
P
Sbjct: 61 YVP 63
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 99 bits (238), Expect = 2e-22
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 403 TIGK 414
T+GK
Sbjct: 113 TVGK 116
Score = 85.8 bits (203), Expect = 3e-18
Identities = 44/68 (64%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 244
MRE I VHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 245 TGAASTYP 268
TG P
Sbjct: 60 TGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 63.3 bits (147), Expect = 2e-11
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +1
Query: 256 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
K+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEG 109
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 260 TYP 268
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 50.4 bits (115), Expect = 1e-07
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Frame = +1
Query: 232 FLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGH 399
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
Score = 47.6 bits (108), Expect = 9e-07
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 83 RECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 247
RE I + GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 0.78
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 315 ADLINNSRFKIDEDS--TGYVLAAPVSLKKVLKESSP 211
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 348 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIW 181
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 178 WPDAHRQDHRGWRRFFQHFLQR 243
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/69 (20%), Positives = 32/69 (46%)
Frame = +1
Query: 226 QHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 405
+H+LQ+ + + V+ ++ V V + + + +L++ DA N+YA +
Sbjct: 250 EHYLQKLSAARAQFMEVYDTVKAEVEKMVTPEQHHLINNVVRLVSRMPDATNSYAMNNML 309
Query: 406 IGKGNRRIW 432
G + +W
Sbjct: 310 PGTAFKNLW 318
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 69 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 191
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 282 DEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIWPSG 172
++D T Y L P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKY-LGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 159 STASSLMARCPQTRPSGVETILSTLSSARP 248
ST SSL + ++PS T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 312 DLINNSRFKIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSV 190
D I+ S+ K ++ Y+ P KKV++ S+P +VL +
Sbjct: 120 DTISFSKPKTVDNYPEYIQHLPGFTKKVVQNSNPEILVLCI 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,474
Number of Sequences: 5004
Number of extensions: 39282
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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