Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0580
(455 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 128 2e-30
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 128 2e-30
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 127 4e-30
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 127 4e-30
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 118 2e-27
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 118 2e-27
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 113 7e-26
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 70 7e-13
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 69 2e-12
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 68 3e-12
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 67 5e-12
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 66 1e-11
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 66 1e-11
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 66 1e-11
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 65 2e-11
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 65 2e-11
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 4e-06
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 47 5e-06
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 30 0.65
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 28 2.6
At5g20060.2 68418.m02389 phospholipase/carboxylesterase family p... 28 3.4
At5g20060.1 68418.m02388 phospholipase/carboxylesterase family p... 28 3.4
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 6.0
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 6.0
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 6.0
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 6.0
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 6.0
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 27 6.0
At3g19180.1 68416.m02435 cell division protein-related weak simi... 27 7.9
At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family pr... 27 7.9
At1g06470.2 68414.m00686 phosphate translocator-related low simi... 27 7.9
At1g06470.1 68414.m00685 phosphate translocator-related low simi... 27 7.9
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 128 bits (309), Expect = 2e-30
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRECI +H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
Score = 119 bits (286), Expect = 1e-27
Identities = 58/77 (75%), Positives = 63/77 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F + KHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGKGNRRIWFLDRIRK 453
TIGK + LDRIRK
Sbjct: 109 TIGKEIVDL-CLDRIRK 124
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 128 bits (309), Expect = 2e-30
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRECI +H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
Score = 119 bits (286), Expect = 1e-27
Identities = 58/77 (75%), Positives = 63/77 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F + KHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGKGNRRIWFLDRIRK 453
TIGK + LDRIRK
Sbjct: 109 TIGKEIVDL-CLDRIRK 124
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 127 bits (306), Expect = 4e-30
Identities = 51/63 (80%), Positives = 57/63 (90%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRECI +H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
Score = 119 bits (286), Expect = 1e-27
Identities = 58/77 (75%), Positives = 63/77 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F + KHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGKGNRRIWFLDRIRK 453
TIGK + LDRIRK
Sbjct: 109 TIGKEIVDL-CLDRIRK 124
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 127 bits (306), Expect = 4e-30
Identities = 51/63 (80%), Positives = 57/63 (90%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRECI +H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
Score = 119 bits (286), Expect = 1e-27
Identities = 58/77 (75%), Positives = 63/77 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F + KHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGKGNRRIWFLDRIRK 453
TIGK + LDRIRK
Sbjct: 109 TIGKEIVDL-CLDRIRK 124
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 118 bits (284), Expect = 2e-27
Identities = 56/77 (72%), Positives = 63/77 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F + KHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGKGNRRIWFLDRIRK 453
T+GK + LDR+RK
Sbjct: 109 TVGKEIVDL-CLDRVRK 124
Score = 109 bits (263), Expect = 7e-25
Identities = 44/63 (69%), Positives = 52/63 (82%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE I +H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGA
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 118 bits (284), Expect = 2e-27
Identities = 56/77 (72%), Positives = 63/77 (81%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F + KHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGKGNRRIWFLDRIRK 453
T+GK + LDR+RK
Sbjct: 109 TVGKEIVDL-CLDRVRK 124
Score = 109 bits (263), Expect = 7e-25
Identities = 44/63 (69%), Positives = 52/63 (82%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE I +H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGA
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 113 bits (271), Expect = 7e-26
Identities = 49/64 (76%), Positives = 56/64 (87%)
Frame = +1
Query: 223 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 402
F F S +HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 403 TIGK 414
T+G+
Sbjct: 109 TVGR 112
Score = 106 bits (254), Expect = 8e-24
Identities = 42/63 (66%), Positives = 51/63 (80%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE I +H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 260 TYP 268
P
Sbjct: 61 HVP 63
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 70.1 bits (164), Expect = 7e-13
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 DRSC-KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
+ SC ++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 EASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 44.4 bits (100), Expect = 4e-05
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 250
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 251 AASTYP 268
P
Sbjct: 56 CGRYVP 61
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 DRSC-KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
+ SC ++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 EASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 260 TYP 268
P
Sbjct: 59 YVP 61
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 67.7 bits (158), Expect = 3e-12
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 DRSC-KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
+ SC + VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 EASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 260 TYP 268
P
Sbjct: 59 FVP 61
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 67.3 bits (157), Expect = 5e-12
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +1
Query: 256 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 110
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 196
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD 39
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 66.1 bits (154), Expect = 1e-11
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +1
Query: 256 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
K+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 260 TYP 268
P
Sbjct: 59 YVP 61
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 66.1 bits (154), Expect = 1e-11
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +1
Query: 256 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
K+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 44.0 bits (99), Expect = 5e-05
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 260 TYP 268
P
Sbjct: 59 YVP 61
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 65.7 bits (153), Expect = 1e-11
Identities = 25/52 (48%), Positives = 38/52 (73%)
Frame = +1
Query: 256 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 110
Score = 43.2 bits (97), Expect = 9e-05
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 260 TYP 268
P
Sbjct: 60 YVP 62
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 DRSC-KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
+ SC + VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G
Sbjct: 53 EASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 260 TYP 268
P
Sbjct: 59 FVP 61
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 DRSC-KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 411
+ SC + VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G
Sbjct: 53 EASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 80 MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 259
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 260 TYP 268
P
Sbjct: 59 FVP 61
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 47.6 bits (108), Expect = 4e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 232 FLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 405
F Q D ++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++
Sbjct: 52 FYQADDQ-HYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ 110
Query: 406 IGKG 417
GKG
Sbjct: 111 -GKG 113
Score = 46.4 bits (105), Expect = 9e-06
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +2
Query: 83 RECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 238
RE I + VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 232 FLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 405
F Q D ++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++
Sbjct: 52 FYQADDQ-HYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ 110
Query: 406 IGKG 417
GKG
Sbjct: 111 -GKG 113
Score = 46.4 bits (105), Expect = 9e-06
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +2
Query: 83 RECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 238
RE I + VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 30.3 bits (65), Expect = 0.65
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -3
Query: 255 AAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 124
A PVS L +SPP +W SGW P +PI
Sbjct: 99 APPVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 303 NNSRFKIDEDSTGYVLAAPVSLKKVLKESSPPPM 202
N R K S+ L APV L + SSPPP+
Sbjct: 38 NPKRLKTANSSSSSSLLAPVILNSPVASSSPPPI 71
>At5g20060.2 68418.m02389 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 27.9 bits (59), Expect = 3.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Frame = -3
Query: 342 MKQLSVCAS--ADLINNSRFKIDEDSTGYVLAAPVSLKKVL-------KESSPPPMVLSV 190
M+ L V A+ A+L++N I G+ + A SL +P P+ LS
Sbjct: 98 MEGLDVAAAHVANLLSNEPADIKLGVGGFSMGAATSLYSATCFALGKYGNGNPYPINLSA 157
Query: 189 GIWPSGWMPCSR 154
I SGW+PC++
Sbjct: 158 IIGLSGWLPCAK 169
>At5g20060.1 68418.m02388 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 27.9 bits (59), Expect = 3.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Frame = -3
Query: 342 MKQLSVCAS--ADLINNSRFKIDEDSTGYVLAAPVSLKKVL-------KESSPPPMVLSV 190
M+ L V A+ A+L++N I G+ + A SL +P P+ LS
Sbjct: 98 MEGLDVAAAHVANLLSNEPADIKLGVGGFSMGAATSLYSATCFALGKYGNGNPYPINLSA 157
Query: 189 GIWPSGWMPCSR 154
I SGW+PC++
Sbjct: 158 IIGLSGWLPCAK 169
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 244 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYKDALTHFD 74
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 244 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYKDALTHFD 74
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 244 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYKDALTHFD 74
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 244 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYKDALTHFD 74
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 191 WASGHQAGCRAPGSKAPSRHYRSGLR 114
W+SGHQ CR G + ++GLR
Sbjct: 90 WSSGHQRNCRDYGITTLTPSAKNGLR 115
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 318 SADLINNSRFKIDEDSTGYVLAAPVSLKKVLKESSPPP 205
SA++ N RFK + T AA +++ V+ + +PPP
Sbjct: 764 SAEVTNYDRFKSGFEETEKDSAATPTVEPVVDDGAPPP 801
>At3g19180.1 68416.m02435 cell division protein-related weak
similarity to cell division protein Ftn2 [Synechococcus
sp. PCC 7942] GI:16226084
Length = 819
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 63 KKLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTR 200
K+L+S SA ++ ESRS S AW S++A P TR
Sbjct: 427 KQLESNSDSAVRNSILGKESRSTSATPSLEAWL-MESVLANFPDTR 471
>At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 1021
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 315 ADLINNSRFKIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSV 190
A ++ R +D S G L P +KK+L +SSP ++L +
Sbjct: 749 AKMVGRPRLAVDLVSKG--LLDPNRMKKLLNQSSPREVILDI 788
>At1g06470.2 68414.m00686 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 315 HWHIQTVVSSRTTYYW*GR 371
H+ IQ V+S T+YW GR
Sbjct: 114 HFSIQAVLSKMITWYWSGR 132
>At1g06470.1 68414.m00685 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 315 HWHIQTVVSSRTTYYW*GR 371
H+ IQ V+S T+YW GR
Sbjct: 114 HFSIQAVLSKMITWYWSGR 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,225
Number of Sequences: 28952
Number of extensions: 220989
Number of successful extensions: 717
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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