Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0578
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   0.43 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   0.99 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   1.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   1.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   3.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   3.0  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    24   4.0  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   9.2  

>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 0.43
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 194  KFIINLKF*WMSGLTIFI 141
            KF++ LKF W+S L +FI
Sbjct: 991  KFLLGLKFYWVSALILFI 1008


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   FFFIISIFIYNLSHNYNTLHYYIA 72
           F FI S F  N+++NY    YY+A
Sbjct: 837 FTFIYSDFTSNITNNYRPRIYYLA 860


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 180 FKILMDVWSDNFYL*FRIDRTLNVITFYL*HVFLFCS 70
           F++LM VW DNF   F   + +++I   +  ++ F S
Sbjct: 810 FEVLMTVWCDNFVY-FSNFKNISIICIAMTKIYSFDS 845


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 250 SMKRFLFSNAMTIKKNVPKNSSS 182
           S+K  + S   T+K NVP++SSS
Sbjct: 481 SLKNRVLSTYNTVKANVPQSSSS 503


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 186 HQFKILMDVWSDNFYL*FRIDRTLNVI-TFYL*HVFLFCSNVVMKCIVIM*QIINKYR 16
           H F+   DV   NF+    +   + V  + +  +  +FC   V+K   ++  +I KYR
Sbjct: 300 HNFEDSKDVLITNFHPSMPLGLIMGVFNSVFAGYCTIFCDEEVLKTPGLLAYLITKYR 357


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 244  KRFLFSNAMTIKKNVPKNSSSI*NFNGCLV*QFLFII*NRS-NIEC 110
            K+F+ +      K    + +S+ NFNG     FLF++ NR+  I+C
Sbjct: 1876 KKFINTEHFLGSKVNLNSVTSLGNFNGSSPNSFLFLLKNRTMRIKC 1921


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 198 RKIHHQFKILMDVWSDNFYL*FRIDRTLNVI 106
           + +H +  I  D+  DNF + F   +T NVI
Sbjct: 123 QSVHERHFIYRDIKPDNFLIGFPGSKTENVI 153


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 97  IKCDHIQCSIYSKL*IKIVRPDIH 168
           I C HI+C I  K   KI +P ++
Sbjct: 52  IVCLHIRCCICCKYNSKIKKPSLN 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,998
Number of Sequences: 5004
Number of extensions: 19081
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)