Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0578
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0465 - 16227552-16227842,16227993-16228217,16228342-162284...    28   0.89 
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641...    25   6.3  

>04_03_0465 -
           16227552-16227842,16227993-16228217,16228342-16228477,
           16229756-16229974,16230269-16230569,16231865-16232108
          Length = 471

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 222 P*LLKKMYRKIHHQFKILMDVWSDN 148
           P  LKK YR++   FK+L D  +DN
Sbjct: 265 PEYLKKFYRELLRNFKVLQDQVTDN 289


>02_02_0447 +
           10363077-10363245,10363419-10363519,10363947-10364140,
           10364223-10364634
          Length = 291

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 262 CILISMKRFLFSNAMTIKKNVPKNSS 185
           C+L + K+F+F +  T+ + VP NS+
Sbjct: 58  CMLRTKKQFIFGSVSTLIQLVPGNSA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,686,121
Number of Sequences: 37544
Number of extensions: 87791
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)