Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0578
         (263 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    27   2.3  
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero...    26   3.0  

>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 212 NSHGV*KQKPFH*YKNT 262
           +SHG+ +Q PFH  KNT
Sbjct: 51  SSHGITRQDPFHWMKNT 67


>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
           superoxide dismutase 3 (FSD3) identical to iron
           superoxide dismutase 3 [Arabidopsis thaliana]
           gi|3273757|gb|AAC24834
          Length = 263

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 174 ILMDVWSDNFYL*FRIDRTLNVITF 100
           I +DVW  ++YL ++ DR   + TF
Sbjct: 208 ICVDVWEHSYYLDYKNDRAKYINTF 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,165,461
Number of Sequences: 28952
Number of extensions: 86101
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)