Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0577
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   6.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   6.3  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.4  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 246 PAYFCREAVMRFGLKGGAAVVTILETLELISQGG 145
           P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 216 ALLLHGRNRPGCWTHPRGLTTDPTTSNYGKL*FCEFD 326
           +L+L+ + R   WT+   LTT  T    G     E+D
Sbjct: 663 SLILYPKARNESWTNTESLTTGITVDERGNSKLIEYD 699


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 289 PVITANYNFASLIFITRCYSPS-PRKSIVNICCISLE 396
           P+I A  +F +  ++         RKSI NICC  ++
Sbjct: 531 PIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMD 567


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 271 SQQILPPVITANYNFASLIFITRCYSPS 354
           S+ I   ++T  Y    LI++TRC+S S
Sbjct: 349 SETIKEALMTRTYRNPFLIYLTRCFSLS 376


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 406 VPIFLMKYNKCSRLTSAVKENNI 338
           +P F+ K+N+   L S++++NN+
Sbjct: 162 IPTFVSKFNEFLALDSSLRDNNL 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,751
Number of Sequences: 5004
Number of extensions: 53079
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)