Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0577
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728...    32   0.30 
01_06_1749 - 39636951-39638102                                         29   3.7  
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694...    28   4.9  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    28   6.5  
04_03_1025 + 21803807-21805249                                         28   6.5  

>03_03_0140 +
           14771293-14771821,14772343-14772455,14772723-14772830,
           14772931-14772973,14773454-14773593,14774216-14774446
          Length = 387

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +1

Query: 235 EIGRGAGPTRAVSQQILPPVITANYNFASLIFITRCYSPSPRKSIVNICCISLEKLVPAW 414
           E+G  +     VS ++LPP ++ N+ F    +    YS S      N    S  +++ + 
Sbjct: 207 ELGGASAQLTFVSDEVLPPELSRNFTFGGTTY--TLYSNSFLNFGQNAAQESFREILRSK 264

Query: 415 DSNAGASLNPNAP 453
           DS  G  ++P AP
Sbjct: 265 DSKNGTLVDPCAP 277


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 173 SSIVTTAAPPFKPKRITA 226
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_02_0036 +
           10468636-10468938,10469014-10469109,10469247-10469453,
           10470762-10471097,10471469-10471582,10471634-10471639
          Length = 353

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 185 TTAAPPFKPKRITASRQK*AGVLDPPARSHNRSYHQ*LR 301
           TTAA   + +R+    ++  G+LD   RS++  YHQ L+
Sbjct: 137 TTAAVDVELRRVVEENRRLRGMLDELNRSYSALYHQYLQ 175


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 217 HYCFTAEIGRGAGPTRAVSQQILPPVITANYNFASLIFITRCYSPSPRKSIVNICCISLE 396
           H    A + R A    A   ++ PP + A +   S    +   SP P +    +   S  
Sbjct: 61  HLSLPASLRRDAVLALARLIKVSPPCLLALHALTSPTSSSSSPSPLPARFAAALRLASSA 120

Query: 397 KLVPAWDSNAGASLNPNA-PDVLSF 468
           + +P + S   A+L P+A PD+L+F
Sbjct: 121 QALPTFASLLLAALLPDATPDLLAF 145


>04_03_1025 + 21803807-21805249
          Length = 480

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 286 VGSVVRPRGWVQHPGLFLP*SSNAFRFEGRGSRCNYT 176
           +G VVRP GW+   G F   +     F+ RG   N+T
Sbjct: 413 LGKVVRPVGWLPWRGEFALRTLYYGEFDSRGPGANHT 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,829
Number of Sequences: 37544
Number of extensions: 366304
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)