Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0577
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    29   2.5  
AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine re...    28   5.8  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 97  VKRLLEPIDIYNVNALSTLR--YEF*GLKYS---YNGCPALQTETHY 222
           +K  +E IDIYN NA+  LR  YE  G KY    Y     ++ E  Y
Sbjct: 87  IKIGIETIDIYNPNAIQDLRSKYEMKGDKYRRELYRASKTMEYELFY 133


>AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine
           receptor, class x protein121 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 259 TRAVSQQILPPVITANYNFASLIFITRCYSPSPRKSIVNICCIS 390
           TR VS  +L  V T       LIFI+     S R   + ICC +
Sbjct: 20  TRTVSAVMLILVCTVRSTINVLIFISTLLRISKRDGFLKICCFN 63


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 122 TSTTSMRYPP*DMSSKVSSIVTTAAPPFKPKRITASRQK*AGVLDPPA 265
           TSTT+    P       ++I TT APP KP   T+      G L  PA
Sbjct: 617 TSTTAYTSTPTASIPAATAITTTTAPP-KPSPTTSESSLITGDLGAPA 663


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 127 YNVNALSTLRYEF*GLKYSYNGCPALQTETHYCFTAEIGRGAGPTRAVSQ 276
           YN  A     Y F G   + N  P+++   +YC  A    G  P RA S+
Sbjct: 716 YNNQAKECQSYLFLGCDGNSNNFPSIEKCQNYCEIAICPNGGSPLRANSK 765


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,915
Number of Sequences: 27780
Number of extensions: 308375
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)