Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0577
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.98 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 349 PSPRKSIVNICCISLEKLVPAWDSNAGASLNPNA 450
           P P   +  +  +S+  LV A  S AG  L P+A
Sbjct: 380 PPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSA 413


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 364 SIVNICCISLEKLV 405
           SI+N+C ISL++ +
Sbjct: 112 SILNLCAISLDRYI 125


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 364 SIVNICCISLEK 399
           SI+N+C ISL++
Sbjct: 152 SILNLCAISLDR 163


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 428 PAFESQAGTNFSNEIQQMFTID 363
           P FE +     SNE+ +M  ++
Sbjct: 85  PKFEGEMAEKISNELNEMCPLE 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,044
Number of Sequences: 438
Number of extensions: 3868
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)