Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0577
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17900.1 68417.m02668 zinc-binding family protein similar to ...    25   0.82 
At3g08800.1 68416.m01022 expressed protein                             29   2.4  
At1g26180.1 68414.m03195 expressed protein                             29   3.1  
At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ...    27   7.2  

>At4g17900.1 68417.m02668 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 227

 Score = 25.4 bits (53), Expect(2) = 0.82
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 310 NFASLIFITRCYSPSPRKSIVNICCISLEKLV 405
           N A ++F+     P P K + N C +    LV
Sbjct: 117 NSAKVVFLNERPQPRPGKGVTNTCKVCYRSLV 148



 Score = 23.8 bits (49), Expect(2) = 0.82
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 400 LVPAWDSNAGASLNPNAPDVLSFRPRRLQTTTSAYC 507
           L+   DS++  ++  N  ++ SF P     TTS+ C
Sbjct: 176 LMETEDSSSSIAIGKNITNLQSFSPSTPPLTTSSNC 211


>At3g08800.1 68416.m01022 expressed protein
          Length = 936

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 322 LIFITRCYSPSPRKSIVNICCISLEKLVPAWDSNAGASLNPNAP 453
           LI I +C+SP      VN+ C+S E  VP     +  S  P  P
Sbjct: 785 LIKIFKCFSPEQFTFSVNLQCVSAEVEVPGNGPYSPISFVPGLP 828


>At1g26180.1 68414.m03195 expressed protein
          Length = 289

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 295 ITANYNFASLIFITRCYSPSPRKSIVNICCISLEKLVPAWDSNAGASLNPNAPD 456
           IT  Y FA         S SP++ I+++  IS      A+ S +GASL  N  D
Sbjct: 13  ITRFYRFAPTRSFASSVSLSPQRHIISLVSISNRGRCFAFSSVSGASLYNNQED 66


>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
           ankyrin repeat family protein similar to patsas protein
           [Drosophila melanogaster] GI:6002770; contains Pfam
           profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
           finger domain
          Length = 592

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 195 AAVVTILETLELISQGG*RIDVVDVYGLQ 109
           +AV   ++  EL+ Q G R+D  D+YG Q
Sbjct: 105 SAVRGAIQVAELLLQEGARVDATDMYGYQ 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,739
Number of Sequences: 28952
Number of extensions: 284384
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)