Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0574
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 241 4e-65
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 141 6e-35
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 140 1e-34
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 128 6e-31
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 2e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 80 2e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 3e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 52 5e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.057
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.075
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.13
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.40
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.53
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.93
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.1
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 6.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.6
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 25 8.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 241 bits (591), Expect = 4e-65
Identities = 110/120 (91%), Positives = 115/120 (95%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 431
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 432 QIMFETFNTPAMYVAIQAVLSLYASRRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 611
QI+FETFN PA YVAIQAVLSLYAS RTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDL
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Score = 122 bits (295), Expect = 3e-29
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAHSK 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA SK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 141 bits (342), Expect = 6e-35
Identities = 60/119 (50%), Positives = 89/119 (74%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 434
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 435 IMFETFNTPAMYVAIQAVLSLYASRRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 611
MFE + +YVAIQAVLSLYA ++G+V+DSGDGV+H VP+YE L H + RLD+
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV 180
Score = 53.6 bits (123), Expect = 2e-08
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAHS 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA +
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 140 bits (339), Expect = 1e-34
Identities = 61/115 (53%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 431
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 432 QIMFETFNTPAMYVAIQAVLSLYASRRTTGIVLDSGDGVSHTVPIYEGYALPHAI 596
+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 67.7 bits (158), Expect = 1e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAHS 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 128 bits (309), Expect = 6e-31
Identities = 60/123 (48%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Frame = +3
Query: 267 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 446
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 447 TFNTPAMYVAIQAVLSLYAS--------RRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 602
+FN +Y+A+QAVL+L AS R TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKT 208
Query: 603 LDL 611
+ L
Sbjct: 209 MPL 211
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 243
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 458
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 459 PAMYVAIQAVLSLYASRR--TTGIVLDSGDGVSHTVPIYEG 575
P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 189
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/107 (36%), Positives = 58/107 (54%)
Frame = +3
Query: 264 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 443
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 444 ETFNTPAMYVAIQAVLSLYASRRTTGIVLDSGDGVSHTVPIYEGYAL 584
E+ PA Y+A Q + +AS + T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 180
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 69.7 bits (163), Expect = 3e-13
Identities = 29/108 (26%), Positives = 59/108 (54%)
Frame = +3
Query: 288 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 467
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 468 YVAIQAVLSLYASRRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 611
Y+ QAV +A+ ++T +++D G + P+ +G + I + L
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 243
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 52.4 bits (120), Expect = 5e-08
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 446
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 447 TFNTPAMYVAIQAVLSLYASRRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 611
P +A + ++ LYA G+V+D G + PI +G + A +L L
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.057
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 463 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 597
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 460 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 597
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 460 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 597
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 460 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 597
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.075
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 339 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 482
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -1
Query: 260 TSLLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 96
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 95 NAATSSS 75
N TS+S
Sbjct: 449 NCTTSTS 455
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 439 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 597
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.70
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 439 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 597
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 451 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 597
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 442 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 594
S ++ P S S C+ T +PP T P ST T +P P
Sbjct: 324 STGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 484 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 588
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.1 bits (62), Expect = 0.53
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 16/125 (12%)
Frame = +3
Query: 285 EHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNT 458
E G + +W +W N + P ++ +LLT+ + Q++FE F
Sbjct: 64 EKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
Query: 459 PAMYVAIQAVL--------SLYASRRTTG------IVLDSGDGVSHTVPIYEGYALPHAI 596
A A L ++ TG +V+DSG +H +P+ + A+
Sbjct: 124 DAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAV 183
Query: 597 LRLDL 611
R+D+
Sbjct: 184 KRVDV 188
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 247 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 158
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 484 PCSRCTRPVVPPVSCWTPATVSPTPCPST 570
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -3
Query: 270 GSGYLFAMCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 97
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 460 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 567
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 239 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 123
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 139 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 243
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 381 LLTEAPLNPKANREKMTQIMFETFN 455
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 292 PCSMGYLRVRIPLCYVPHLLHKSPSVPYRP 203
P + Y PL VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 466 CTSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTKDTHSPTPSCVWT 609
C +PS+ C + PV S T ++++PTP ++ T +PT + T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 499 TRPVVPPVSCWTPATVSPTPCPSTKDT 579
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 478 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPS 597
S+ S T P PP + T PA SP P + H PT S
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTAS 941
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 481 KPCSRCTRPVVPPVSCWTPATVSPTPCP 564
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 434 DHVRNIQHARHVRRHPSRALAVRVPSYHRYRAGLRRRCLPHRAHL 568
DH + HARHV + A P+ +Y RR PH +++
Sbjct: 21 DHSQRNNHARHVSSSGTTLFAPVKPATKKYN---YRRVSPHGSYI 62
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 442 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 588
S+H + +PS + P+ P ++ W P T PT P + + + P
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,639
Number of Sequences: 5004
Number of extensions: 63781
Number of successful extensions: 258
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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