Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0573
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0210 - 21597470-21598093 31 0.54
04_04_0347 + 24564589-24565296 30 1.2
06_02_0151 - 12299935-12300189,12300713-12300986,12301072-123013... 30 1.6
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 29 2.2
04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009... 29 2.2
05_06_0056 + 25246631-25246913,25247047-25247141,25247593-252476... 29 2.9
01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579... 29 2.9
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 29 3.8
10_08_0579 - 18906626-18907042 28 5.0
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621 28 5.0
01_06_0750 - 31662986-31663273 28 6.6
06_03_0342 + 19737951-19738772 27 8.7
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 27 8.7
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 27 8.7
>09_06_0210 - 21597470-21598093
Length = 207
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -3
Query: 569 LRAGPVLAASAGCEAPRASPAAAHGPDVRPAWPASAW 459
L A P AA+A PR PA+ PD P WP S W
Sbjct: 12 LGAAPGKAAAAPA-VPRPDPASPQ-PDPTPGWPGSLW 46
>04_04_0347 + 24564589-24565296
Length = 235
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 578 LSFLRAGPVLAASAGCEAPRASPAAAHGPDVRPAWPASA 462
+S L A +LAA++ A SPA A P WPA A
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPWPARA 43
>06_02_0151 -
12299935-12300189,12300713-12300986,12301072-12301378,
12301467-12301714,12303181-12303480,12303564-12303620,
12304831-12304940,12305053-12305382
Length = 626
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -3
Query: 599 PACSRRTLSFLRAGPVLA----ASAGCEAPRASPAAAHGPDVRP 480
PA S R LR GP+L ASA EAP SP+ + RP
Sbjct: 38 PAASTRRRLPLRRGPLLTRGIMASAAAEAPAPSPSPTAAANSRP 81
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 460 HADAGHAGRTSGPCAAAGDARGASHPADAASTGPALKKESV 582
H H+G G AAAG+AR +S + S+G K + +
Sbjct: 291 HRSLNHSGNRGGAAAAAGNARSSSASGLSNSSGGDRKYDKI 331
>04_04_0132 +
22998941-22999073,22999218-22999347,23000257-23000950,
23001545-23001580,23003165-23003446
Length = 424
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 457 HHADAGHAGRTSGPCAAAGDARGASHPADAASTGPALKKESVRLE 591
H + AG G AAG A GA H AA + ES RLE
Sbjct: 126 HKPRSDVAGAGGGGGGAAGGAAGAQHAKAAAHLSHTAQWESARLE 170
>05_06_0056 +
25246631-25246913,25247047-25247141,25247593-25247629,
25248158-25248219,25248305-25248418,25249248-25249352,
25249441-25249539,25250203-25250359,25250473-25250579
Length = 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = -3
Query: 563 AGPVLAASAGCEAPRASPAAAHGPDVRPAWPASAW 459
A PV AA+AG A AS AAA G +PA P W
Sbjct: 39 AAPVEAAAAG--ASDASAAAAAGAGEQPAPPPKRW 71
>01_01_0749 -
5794140-5794346,5795445-5795558,5795856-5796008,
5796124-5796207,5796262-5796399,5796500-5796598
Length = 264
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 493 GPCAAAGDARGASHPADAASTGPALKKESV--RLEQAGVS 606
GPCA G A H A + P+++ SV R AGVS
Sbjct: 29 GPCAKGGGAASTLHAATRGAPAPSIQAPSVVRRYCSAGVS 68
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 475 GPHQRGAGARYTADEDERQVASGDWRLSGRSSVAG 371
GP ++ A AR D R++A+G WRL +VAG
Sbjct: 78 GPSEKAAAAR---DVSVRRLAAGVWRLRPPEAVAG 109
>10_08_0579 - 18906626-18907042
Length = 138
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 563 AGPVLAASAGCEAPRASPAAAHGP 492
A P+LA S G E P A AAA GP
Sbjct: 34 ARPLLAGSGGAEPPSAVLAAAPGP 57
>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
Length = 283
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 504 CGRRRAWC-LASCRCREHWARSQERKRAS*AGRSL 605
C RR+ + LAS R +H Q RKRA AG L
Sbjct: 193 CHRRKGFLSLASARAAQHQPLQQGRKRARDAGEEL 227
>01_06_0750 - 31662986-31663273
Length = 95
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 469 AGHAGRTSGPCAAAGDARGASHPADA-ASTGPALKKESVRLEQAG 600
AG AG P AAAG+A G A G A ES RL G
Sbjct: 45 AGVAGMMKVPAAAAGEAAGRRSGGGAVVVVGGAAAHESKRLSPGG 89
>06_03_0342 + 19737951-19738772
Length = 273
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 478 AGRTSGPCAAAGDARGASHPADAASTGPA 564
AG GP A GA+ PADAA+ G A
Sbjct: 211 AGELRGPLADVARQLGAAVPADAAAAGLA 239
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 499 TVRMCVQHGPHQRGAGARYTADEDERQVASGD 404
T C+ GPH AG + A EDE + A GD
Sbjct: 170 TTNGCMSTGPHYNPAGKEHGAPEDETRHA-GD 200
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 481 QHGPHQRGAGARYTADEDERQVASGDWRLSGRSS 380
Q G +R T+D D R ++S WR RSS
Sbjct: 625 QSGNGERSDTLEVTSDSDTRDMSSDAWRSRSRSS 658
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,549
Number of Sequences: 37544
Number of extensions: 248508
Number of successful extensions: 1188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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