Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0573
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.11 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 602 TPACSRRTLSFLRAGPVLAASAGCEAPRASPAA 504
           TP+C R+  +   A P+LA      + +ASP +
Sbjct: 98  TPSCRRQRYNIAAANPLLAEKLAAPSSQASPTS 130


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 501 RCGRRRAWCLASCRCREH 554
           R  RRR W +   R REH
Sbjct: 35  RLRRRREWMIQQEREREH 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,242
Number of Sequences: 438
Number of extensions: 2347
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)