Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0573
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa...    31   0.78 
At3g25740.1 68416.m03205 metallopeptidase M24 family protein sim...    28   4.2  
At3g07100.1 68416.m00845 protein transport protein Sec24, putati...    28   4.2  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                28   5.5  
At4g34050.2 68417.m04832 caffeoyl-CoA 3-O-methyltransferase, put...    28   5.5  
At4g34050.1 68417.m04831 caffeoyl-CoA 3-O-methyltransferase, put...    28   5.5  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    27   7.3  
At4g00860.1 68417.m00117 stress-related ozone-induced protein (O...    27   9.6  

>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein contains
           Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 453

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = +3

Query: 372 PATLERPDRRQSPDATCRSSSSAVYRAPAPR*CGPCWTHIRTVR----CGRRRAWCLASC 539
           P +     + Q  D + R  + A  +APA   C  CWT   + R    CG R  +C +  
Sbjct: 268 PRSFSPEIKPQDDDESTREETEATEKAPAQVSCIICWTEFSSSRGILPCGHR--FCYS-- 323

Query: 540 RCREHWARS--QERKRAS 587
            C + WA     ERK+ +
Sbjct: 324 -CIQKWADRLVSERKKTT 340


>At3g25740.1 68416.m03205 metallopeptidase M24 family protein
           similar to SP|O33343 Methionine aminopeptidase (EC
           3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 344

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 455 GTTLMRAMLDAHPDRALRQETRVVPRI---LQMPRALGPLSRKKACVLS 592
           GT   R  +  H  + L  E+  VP I   LQ+P ++G +  KKAC L+
Sbjct: 67  GTVSPRLSVPDHILKPLYVESSKVPEISSELQIPDSIGIVKMKKACELA 115


>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
           similar to protein transport protein Sec24A
           (SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
          Length = 1038

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 602 TPACSRRTLSFLRAGPVLAASAGCEAP-RASPAAAHGPDVRPAWPAS 465
           TP+ S+ T  F  +GP  A   G   P + SP  +  P  RP  P+S
Sbjct: 48  TPSASQPTRPFTASGPPPAPPVGTMRPGQPSPFVSQIPGSRPPPPSS 94


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 557 PVLAASAGCEAPRASPAAAHGPDVRP 480
           P  A S   +AP ASP A  GP V P
Sbjct: 65  PSSAPSPSSDAPTASPPAPEGPGVSP 90


>At4g34050.2 68417.m04832 caffeoyl-CoA 3-O-methyltransferase,
           putative nearly identical to GI:2960356 [Populus
           balsamifera subsp. trichocarpa], GI:684942 [Medicago
           sativa subsp. sativa] isoform contains a GT-TG intron
           which removes an internal segment of the protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 413 RDLPLIFIGGVPRSGTTLMRAMLDAHPDRALRQETRVV-PRILQMPRALGPLSRKKACVL 589
           R + L+ IGGV     TL    + A PD  +R+  R     +L++ +AL    R + C+L
Sbjct: 76  RLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICML 135


>At4g34050.1 68417.m04831 caffeoyl-CoA 3-O-methyltransferase,
           putative nearly identical to GI:2960356 [Populus
           balsamifera subsp. trichocarpa], GI:684942 [Medicago
           sativa subsp. sativa] isoform contains a GT-TG intron
           which removes an internal segment of the protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 413 RDLPLIFIGGVPRSGTTLMRAMLDAHPDRALRQETRVV-PRILQMPRALGPLSRKKACVL 589
           R + L+ IGGV     TL    + A PD  +R+  R     +L++ +AL    R + C+L
Sbjct: 187 RLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICML 246


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 448 ALRHHADAGHAG-RTSGPCAAAGDARGASHPADAASTGPALKKESVR 585
           ALR      H+G    G CAA  D   + +P       PAL K  VR
Sbjct: 72  ALRRRPWINHSGCDDDGDCAANNDNAASQNPDQNCDVKPALPKGVVR 118


>At4g00860.1 68417.m00117 stress-related ozone-induced protein
           (OZI1) / stress-related ozone-responsive protein
           identical to stress-related ozone-induced protein AtOZI1
           (mRNA corresponding to this gene accumulates in response
           to ozone stress and pathogen (bacterial) infection);
           putative pathogenesis-related protein (GI:790583)
           [Arabidopsis thaliana]
          Length = 80

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 500 ALRQETRVVPRILQMPRALGPLSRKKACVLSRPE 601
           A  +  +  PR+   P  + P+SR+   V SRPE
Sbjct: 47  ATEERLQAWPRVAGPPVVMNPISRQNFIVKSRPE 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,506,453
Number of Sequences: 28952
Number of extensions: 174115
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)