Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0571
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.58 
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   4.1  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   7.1  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   7.1  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.4  
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    25   9.4  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 342  LVVSTDKKSHFTMGSN*VPVVTLNNEFEKVYSCTL 238
            ++ STDK   FT G+   P+ + N+EF  V+S  L
Sbjct: 2317 ILSSTDKMLSFTSGATNYPLGSSNDEFSTVFSKVL 2351


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +2

Query: 8   IVLMDKRFRSLIGFGVIPFK*MFLLRILLSIDRYSH 115
           +V M   FRS I FGV  F   FL+RIL  I  YS+
Sbjct: 44  LVSMSWLFRSTICFGVSLFLSFFLVRILWGI-AYSY 78


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 99  MLKRILNKNIYLKGITPKPIKL 34
           ML RIL K  Y K   P P+K+
Sbjct: 149 MLPRILGKTFYQKSKVPVPVKI 170


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 94  KHRPLFTCKAFIGLYFYHDF 153
           KH+  FT +  +GL FY DF
Sbjct: 293 KHKDSFTKQIKVGLEFYEDF 312


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -1

Query: 93  KRILNKNIYLKGITPKPIKLRNRLSI 16
           +R+L +   L+G+TP+P+ L+N +S+
Sbjct: 260 RRMLERR-RLQGLTPQPLALKNIISV 284


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 46  FWSNTFQINVFVKNPFKHRPLFTCKAFIGLYFYHDF 153
           FWS    I+VF  + +   P+      +GL+ YH F
Sbjct: 399 FWSLVIGIHVFGYHVYWLYPIAFVLIILGLFVYHVF 434


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 539 YRAPPRVNSISQ 504
           Y APPRVNSIS+
Sbjct: 212 YMAPPRVNSISR 223


>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 84  LNKNIYLKGITPKPIKLRNRLSIK 13
           LNK ++ +GI   P +LR RLS K
Sbjct: 60  LNKEVWKRGIRNVPHRLRLRLSRK 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,860
Number of Sequences: 5004
Number of extensions: 54419
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)