Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0571
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62850.1 68416.m07061 zinc finger protein-related contains Pf...    29   2.0  
At4g12710.1 68417.m01995 armadillo/beta-catenin repeat family pr...    28   4.7  
At4g31380.1 68417.m04450 hypothetical protein                          27   8.1  

>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
           profiles PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger, C2H2 type
          Length = 472

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 28  ISQFNWFWSNTFQINVFVKNPFKHRPLFT 114
           ++   W W +     VF  +P+ H PL T
Sbjct: 373 LTSAEWLWKSLLVAGVFFSSPYHHHPLMT 401


>At4g12710.1 68417.m01995 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 402

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = -2

Query: 314 ISQWDQIEFQW*RSTTNSKKYIRALLILHSQPSVLTGDHNNCNSAERLGTRLNRKS 147
           IS+ D+ E +   +TTN+ K  + LLILH    +L GD +    A +   +L RKS
Sbjct: 24  ISEEDEAEEE---TTTNTWKTTKELLILHLSKKLLHGDLDFRIEAAKEIRKLLRKS 76


>At4g31380.1 68417.m04450 hypothetical protein
          Length = 124

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 292 SSSGNAQQRIRKSIFVH 242
           SS GN QQR+R+ I VH
Sbjct: 32  SSGGNQQQRMRRKILVH 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,484
Number of Sequences: 28952
Number of extensions: 271153
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)