Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0570
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25662 Cluster: Repeat organellar protein; n=5; Plasmod...    29   1.3  
UniRef50_A5KDP4 Cluster: Variable surface protein Vir8-related; ...    33   6.1  
UniRef50_P21422 Cluster: DNA-directed RNA polymerase beta' chain...    33   6.1  
UniRef50_UPI0001555F36 Cluster: PREDICTED: similar to olfactory ...    33   8.0  
UniRef50_Q6MSW7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_Q4YAT8 Cluster: Putative uncharacterized protein; n=2; ...    33   8.0  

>UniRef50_Q25662 Cluster: Repeat organellar protein; n=5; Plasmodium
            (Vinckeia)|Rep: Repeat organellar protein - Plasmodium
            chabaudi
          Length = 1939

 Score = 29.5 bits (63), Expect(2) = 1.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 356  SIFLKTDFNIKTEL--ANRTKNVQNFTYRIFIFIFFWCLRSSVLIK 225
            SI LKT   ++ EL      KN+ N+ Y+I +  +  CLR   ++K
Sbjct: 1745 SIRLKTIAQLRKELNFEREAKNILNYDYQIILNKYHECLRKLKIVK 1790



 Score = 24.6 bits (51), Expect(2) = 1.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 455  DVFKNYVKCV--RFKLNAKCNYFYCTFIQLYVEIKS 354
            D  +NYVKCV   +  N +  Y +  F Q Y+E  S
Sbjct: 1670 DKLRNYVKCVNEEYVNNERYEYSWALF-QTYLETAS 1704


>UniRef50_A5KDP4 Cluster: Variable surface protein Vir8-related;
           n=1; Plasmodium vivax|Rep: Variable surface protein
           Vir8-related - Plasmodium vivax
          Length = 324

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -1

Query: 467 VLDC-DVFKNYVKCVRFKL--NAKCNYFYCTFIQLYVEIKSIFLKTDFNIKTELANRTKN 297
           V +C D++K Y+         NA C+     F +LY E+K  F + ++NI    +   KN
Sbjct: 164 VNECIDIYKRYINTYSGPQCDNALCDELL-QFEELYEELKRDFSEYEYNIPNLQSTPGKN 222

Query: 296 VQNFTYRI 273
           V+NF+  +
Sbjct: 223 VENFSLNV 230


>UniRef50_P21422 Cluster: DNA-directed RNA polymerase beta' chain;
           n=6; Plasmodium|Rep: DNA-directed RNA polymerase beta'
           chain - Plasmodium falciparum
          Length = 575

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 26/78 (33%), Positives = 39/78 (50%)
 Frame = -2

Query: 487 SLYSLFRYSIVMYLKITLNVCASSLTRNVTIFIVLSFNYMLK*NQFFLKQISILKRNSLI 308
           +L+  F  +I+ Y    LN+   SL  N  +FI+  F   L  NQF +  I+       +
Sbjct: 374 NLFKPFLINILKY-NSKLNIIFKSLLINKNLFIIQKFLNRLLQNQFII--INRAPTLHRM 430

Query: 307 ELKTFKILLTEYLFLYFF 254
            L++FK LLTE   L F+
Sbjct: 431 NLQSFKPLLTEGYSLKFY 448


>UniRef50_UPI0001555F36 Cluster: PREDICTED: similar to olfactory
           receptor, family 5, subfamily U, member 1, partial; n=2;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           olfactory receptor, family 5, subfamily U, member 1,
           partial - Ornithorhynchus anatinus
          Length = 438

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = -2

Query: 481 YSLFRYSIVMYLK-ITLNVCASSLTRNVTIFIVLSFNYMLK*NQ-FFLKQISILKRNSLI 308
           Y L  +S V  L+ I L V   +LT N+ IF+V +FN  L     FFL+ +S+L R SLI
Sbjct: 10  YLLLGFSEVWELQLIHLLVYLVALTGNLLIFVVTAFNRRLHTPMYFFLRHLSVLDR-SLI 68

Query: 307 EL 302
            +
Sbjct: 69  SV 70


>UniRef50_Q6MSW7 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma mycoides subsp. mycoides SC|Rep: Putative
           uncharacterized protein - Mycoplasma mycoides subsp.
           mycoides SC
          Length = 210

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 464 LDCDVFKNYVKCVRFKL-NAKCNYFYCTFIQLYVEIKSIFLKTDFNIKTELANRTKNVQN 288
           L+ DVF   +KCV   L N     F C +I+  +  K  FL  D N K+ L N  K + N
Sbjct: 84  LNSDVF---IKCVNSDLVNIITTNFTCDYIKEILFNKDQFLNIDINFKSNLKNIYKKLSN 140


>UniRef50_Q4YAT8 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 866

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -1

Query: 443 NYVKCVRFKLNAK-CNYFY-CTFIQLYVEIKSIFLKTDFNIKTELANRTKNVQNFTYRIF 270
           NY+K        K  NY Y C ++  ++     FLK DF   ++  N+  +++   Y  +
Sbjct: 672 NYIKKTNKLYYFKPSNYIYICDYLDYFIYGIIYFLKNDFRRSSKYFNKCISIKKKFYLCY 731

Query: 269 IFIFFWCLRSSVLIKKSRK 213
           +++    L ++ LI + +K
Sbjct: 732 VYLLKIALTNNTLIGQDKK 750


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,560,401
Number of Sequences: 1657284
Number of extensions: 11506365
Number of successful extensions: 31717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31703
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)