Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0570
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        30   0.34 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    27   1.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.2  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   4.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.5  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   5.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.3  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 TKKNHLPGTIFSRFLY*HGTSKAPKKYKNKYSVSKI 290
           T  NH PGT+F R +   G    P  Y+N    ++I
Sbjct: 134 TYNNHRPGTLFPRVIVMKGDGHTPYDYENDGKANEI 169


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 413 NAKC--NYFYCTFIQLYVEIKSIFLKTDFN 330
           NA C  NYFY +FIQ Y      +LK   N
Sbjct: 17  NAYCSKNYFYRSFIQYYSPSNGPYLKISMN 46


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 81  PADHKHNSVQFSSYNGKFPNTLY 149
           P+ H    V  +SYNG  P+T Y
Sbjct: 327 PSYHAEQEVNVNSYNGGIPSTSY 349


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 440 YVKCVRFKLNAKCNYFYCTFIQLYVEIKSIFLKTDFNIKTELANRT 303
           + KC+R  LN    YF C   + Y ++++   + D ++   L N T
Sbjct: 215 HYKCIRPTLNESHPYFSCFICRKYHDLEAPVEEGDESLNDLLRNAT 260


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 395  FYCTFIQLYVEIKSIFLKTDFNIKTELANRTKNVQNFTY-RIFIFI 261
            ++  F   Y E K +     F+I T + NR  + Q F+Y R+ +++
Sbjct: 1247 YFDNFTVQYAEAKDVIKGLLFSILTCIYNRITSGQGFSYSRLLVYL 1292


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 201 PGTIFSRFLY*HGTSKAPKKYKNKYSVSKILNVFSSISEFRFNI 332
           P  +   FL  HG  +   + + ++  +K  NVF S+ + + NI
Sbjct: 237 PKQVTDLFLVVHGIGQKRSETEERFLFTKTCNVFRSLIQIQKNI 280


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 81  PADHKHNSVQFSSYNGKFPNTLYFN 155
           P +  H+S   S++N  FPN+ Y N
Sbjct: 252 PLNPSHDSAGASTFNTYFPNSTYQN 276


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 258  KYKNKYSVSKILNVFSSISEFRFNIEICFKKN*FYFNI*LNESTIKIVT 404
            KYKN  ++S     F  I+EF   +  CF+    +F    N+   K+VT
Sbjct: 995  KYKNLQNMSSERPGFEPITEFVKELHRCFEDTISFF---YNKKNPKVVT 1040


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 405 FRVKLEAHTFNVIFKYITIEYLNNEY 482
           ++ +L+  T N  F YI++E  NN Y
Sbjct: 9   YQTRLDVQTPNRWFLYISLELFNNMY 34


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 467 VLDCDVFKNYVKCVRFKLNAKCNYFYCTFIQLYV 366
           V+D    KN + C++F L+    YFY     L V
Sbjct: 160 VVDGTPEKNVITCMKFGLSTTLYYFYPVISYLVV 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,706
Number of Sequences: 5004
Number of extensions: 51809
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)