Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0570
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    29   3.3  
10_08_1035 - 22466674-22466855,22467171-22467373,22467541-224677...    29   4.3  
08_02_0446 - 17221514-17221626,17221960-17222035,17222381-172225...    29   4.3  

>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -1

Query: 512 LGEGALVSFLIFIV*VLDCDVFK------NYVKCVRFKLNAKCNYFYCTFIQLYVEIKSI 351
           L E  L   L+ +   L C++F       N  +CVR  +  +  Y Y  ++Q  + I ++
Sbjct: 546 LEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIYKVYLQGNLYICTV 605

Query: 350 FLKT 339
           +LKT
Sbjct: 606 YLKT 609


>10_08_1035 -
           22466674-22466855,22467171-22467373,22467541-22467729,
           22467847-22467962,22468650-22468764,22469055-22469156,
           22469225-22469361
          Length = 347

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 523 VWHAAVAPTRAARILRRAFRG----PSRLSDLDATHSDL 627
           +W   +    A +I+RR F      P+ L+DLD+ HSDL
Sbjct: 1   MWVEILCGLLAYKIIRRVFFADSDDPAHLADLDSAHSDL 39


>08_02_0446 -
           17221514-17221626,17221960-17222035,17222381-17222536,
           17222645-17222723,17223858-17224087,17224938-17225076,
           17225158-17225220,17226198-17226279,17226366-17226444,
           17227046-17227225,17227331-17227590,17227704-17227806,
           17227915-17228058,17228148-17228246
          Length = 600

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 173 ATIMLPVKIQGVRKLAVIGRKLNRVMFVISGLWY 72
           A I+LP ++  V K A IG  + +   ++ G+WY
Sbjct: 553 AKIILPQRVPYVDKTAKIGVIMQKEKIIVRGVWY 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,389
Number of Sequences: 37544
Number of extensions: 280573
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)