Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0570
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       29   3.4  
SB_45604| Best HMM Match : Lipase_GDSL (HMM E-Value=4.1)               29   4.4  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.4  
SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5)                    29   4.4  
SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)                     28   7.7  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 611 ASRSDRRDGPRNARLRMRAARVGATAACQTVQTLGE 504
           AS SDR   P  ARLR+++    + A C    TLGE
Sbjct: 473 ASSSDRTSVPAFARLRLQSKPGSSGAWCSAKNTLGE 508


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 599  DRRDGPRNARLRMRAARVGATAACQTVQTLGEGALV 492
            D RDG       +R ARVG     QTV+  G G  V
Sbjct: 970  DARDGTHRTGRMVRDARVGIHVTAQTVRAHGSGRTV 1005


>SB_45604| Best HMM Match : Lipase_GDSL (HMM E-Value=4.1)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 464 LDCDVFKNYVKCVRFKLNAKCNYFYCTFIQLY 369
           +D D++K   +CV FK + +  YF+    Q Y
Sbjct: 28  IDLDIYKPGARCVAFKTSEQNIYFWIKIFQKY 59


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 635  LSNRSECVASRSDRRDGPRNARL--RMRAARVGATAA 531
            +SN++   +S+ DR  GP  ARL  R R  ++GA +A
Sbjct: 1551 ISNKAIRASSQWDRNHGPERARLHIRKRRGKIGAWSA 1587


>SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5)
          Length = 426

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 464 LDCDVFKNYVKCVRFKLNAKCNYFYCTFIQLY 369
           +D D++K   +CV FK + +  YF+    Q Y
Sbjct: 28  IDLDIYKPGARCVAFKTSEQNIYFWIKIFQKY 59


>SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 481 IRNETRAPSPKVCTVWHAAVAPTRAARILRRAFRGPS 591
           +R   RAP+  +C +     APT + R LRR  R P+
Sbjct: 154 LRRHKRAPTLSLCRLRRHKRAPTLSLRRLRRHKRSPT 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330,515
Number of Sequences: 59808
Number of extensions: 352169
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)