Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0570
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine rece...    31   0.96 
U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine rece...    27   8.9  

>U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 25 protein.
          Length = 318

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
 Frame = -2

Query: 421 SSLTRNVTIFI-----VLSFNYMLK*NQFFLKQISILK------RNSLIELKTFKILLTE 275
           SS+T    +FI     V+++ ++ K    F +++S++K      RN L+++ TFK++L  
Sbjct: 174 SSITLLTQLFITACLAVVAYTFIRKSLSKFARKMSVIKTNEKNLRNRLVKVATFKLILPS 233

Query: 274 YLFL 263
           ++FL
Sbjct: 234 FIFL 237


>U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein201 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 22  NGFYDLVTKTFR*KSYLYQSPLITNITLFSFRPITASFRTPCILTGNIIVANFIQKKTIY 201
           N    L  KT   K+Y  Q  L+  + + SF P+T  F  P ++ G ++V      + I 
Sbjct: 229 NSIQQLKQKTMSQKTYNMQKKLLIALVIQSFVPMT-FFMFP-LVYGMVVVIKEYYNQAIV 286

Query: 202 PVLF 213
            +LF
Sbjct: 287 NILF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,665
Number of Sequences: 27780
Number of extensions: 290059
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)